Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   OIO44_RS17460 Genome accession   NZ_CP107590
Coordinates   3607156..3607974 (-) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain 1326569     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3602156..3612974
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OIO44_RS17445 (OIO44_17450) pilE 3602373..3602798 (-) 426 WP_000788342.1 type IV pilin protein Machinery gene
  OIO44_RS17450 (OIO44_17455) pilY2 3602795..3603277 (-) 483 WP_001046420.1 type IV pilin protein Machinery gene
  OIO44_RS17455 (OIO44_17460) pilY1 3603290..3607144 (-) 3855 WP_000768970.1 PilC/PilY family type IV pilus protein Machinery gene
  OIO44_RS17460 (OIO44_17465) pilX 3607156..3607974 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  OIO44_RS17465 (OIO44_17470) pilW 3607971..3608972 (-) 1002 WP_000079200.1 PilW family protein Machinery gene
  OIO44_RS17470 (OIO44_17475) pilV 3608973..3609533 (-) 561 WP_085916952.1 type IV pilus modification protein PilV Machinery gene
  OIO44_RS17475 (OIO44_17480) fimU 3609527..3610000 (-) 474 WP_001214061.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  OIO44_RS17480 (OIO44_17485) ispH 3610170..3611120 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  OIO44_RS17485 (OIO44_17490) gmk 3611243..3611872 (+) 630 WP_000015937.1 guanylate kinase -
  OIO44_RS17490 (OIO44_17495) rpoZ 3611945..3612223 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  OIO44_RS17495 (OIO44_17500) - 3612262..3612391 (+) 130 Protein_3417 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=741061 OIO44_RS17460 WP_000149374.1 3607156..3607974(-) (pilX) [Acinetobacter baumannii strain 1326569]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=741061 OIO44_RS17460 WP_000149374.1 3607156..3607974(-) (pilX) [Acinetobacter baumannii strain 1326569]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCTGATTGTTTGGCAAACCATAATGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993