Detailed information NTG0741032

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QCL60_RS05060
• Genome accession: NZ_CP122517
• Coordinates: 1043518..1044510 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain MY1-8
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1038518..1049510

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QCL60_RS05030 (QCL60_05030)	ispD	1038579..1039289 (+)	711	WP_000246136.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
QCL60_RS05035 (QCL60_05035)	ispF	1039289..1039768 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QCL60_RS05040 (QCL60_05040)	truD	1039765..1040814 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
QCL60_RS05045 (QCL60_05045)	surE	1040795..1041556 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
QCL60_RS05050 (QCL60_05050)	pcm	1041550..1042176 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
QCL60_RS05055 (QCL60_05055)	nlpD	1042361..1043455 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
QCL60_RS05060 (QCL60_05060)	rpoS	1043518..1044510 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
QCL60_RS05065 (QCL60_05065)	-	1044631..1045038 (-)	408	WP_001208070.1	MarR family transcriptional regulator	-
QCL60_RS05070 (QCL60_05070)	-	1045185..1045778 (+)	594	WP_000767707.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
QCL60_RS05075 (QCL60_05075)	-	1045778..1047205 (+)	1428	WP_000863223.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
QCL60_RS05080 (QCL60_05080)	-	1047216..1047452 (+)	237	WP_000562984.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
QCL60_RS05085 (QCL60_05085)	ygbN	1047491..1048855 (-)	1365	WP_000104439.1	GntP family transporter	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=741032 QCL60_RS05060 WP_000081550.1 1043518..1044510(+) (rpoS) [Escherichia coli strain MY1-8]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=741032 QCL60_RS05060 WP_000081550.1 1043518..1044510(+) (rpoS) [Escherichia coli strain MY1-8]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715