Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   K6J91_RS21145 Genome accession   NZ_AP024624
Coordinates   4048891..4049580 (-) Length   229 a.a.
NCBI ID   WP_003243527.1    Uniprot ID   P42421
Organism   Bacillus subtilis strain BEST3106     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 4043891..4054580
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J91_RS21125 (BsBEST3106_40770) yxeA 4044820..4045167 (-) 348 WP_003227084.1 YxeA family protein -
  K6J91_RS21130 (BsBEST3106_40780) yxdM 4045181..4047065 (-) 1885 Protein_4132 ABC transporter permease YxdM -
  K6J91_RS21135 tpeL 4047040..4047773 (-) 734 Protein_4133 ABC transporter ATP-binding protein -
  K6J91_RS21140 (BsBEST3106_40820) yxdK 4047917..4048894 (-) 978 WP_014481410.1 two-component system sensor histidine kinase YxdK -
  K6J91_RS21145 (BsBEST3106_40830) braR 4048891..4049580 (-) 690 WP_003243527.1 two-component system response regulator YxdJ Regulator
  K6J91_RS21150 (BsBEST3106_40840) iolJ 4049688..4050560 (-) 873 WP_014481411.1 6-phospho-5-dehydro-2-deoxy-D-gluconate aldolase -
  K6J91_RS21155 (BsBEST3106_40850) iolI 4050581..4051417 (-) 837 WP_003244546.1 2-keto-myo-inositol isomerase -
  K6J91_RS21160 (BsBEST3106_40860) iolH 4051503..4052372 (-) 870 WP_003243149.1 sugar phosphate isomerase/epimerase family protein -
  K6J91_RS21165 (BsBEST3106_40870) iolG 4052392..4053426 (-) 1035 WP_003244482.1 bifunctional inositol 2-dehydrogenase/D-chiro-inositol 1-dehydrogenase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26600.34 Da        Isoelectric Point: 4.8564

>NTDB_id=74102 K6J91_RS21145 WP_003243527.1 4048891..4049580(-) (braR) [Bacillus subtilis strain BEST3106]
MNKIMIVEDSEDIRGLLQNYLEKYGYQTVVAADFTAVLDVFLREKPDVVLLDINLPAYDGYYWCRQIRQHSTSPIIFISA
RSGEMDQVMAIENGGDDYIEKPFSYDIVLAKIKSQIRRAYGEYAAKQGEKVVEYAGVQLFVERFELRFQDEKSELSKKES
KLLEVLLERGEKVTSRDRLMEKTWDTDIFIDDNTLNVYITRLRKKLRELNAPVSIEAVRGEGYQLRAQS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=74102 K6J91_RS21145 WP_003243527.1 4048891..4049580(-) (braR) [Bacillus subtilis strain BEST3106]
TTGAATAAAATCATGATTGTGGAAGACAGTGAAGACATTCGCGGACTATTGCAGAATTACCTTGAAAAATACGGATACCA
AACAGTGGTCGCCGCGGATTTTACAGCTGTTCTTGATGTCTTTTTGCGGGAAAAGCCCGATGTGGTGCTGCTTGATATCA
ATTTGCCGGCATATGACGGATATTATTGGTGCCGGCAGATCCGCCAGCACTCCACAAGCCCGATCATCTTTATTTCTGCC
AGAAGCGGGGAAATGGATCAGGTGATGGCGATTGAAAATGGGGGAGACGATTATATCGAAAAACCGTTTTCTTATGATAT
TGTGCTTGCGAAAATCAAAAGCCAGATCCGGAGGGCGTACGGGGAGTACGCCGCAAAGCAGGGAGAGAAAGTGGTTGAAT
ATGCCGGCGTTCAGCTCTTTGTGGAACGGTTTGAACTGCGTTTTCAGGATGAAAAAAGCGAGCTTTCTAAAAAAGAAAGC
AAGCTTTTGGAAGTGCTGCTTGAGCGGGGAGAAAAGGTGACGAGTCGGGACCGTCTCATGGAAAAGACGTGGGACACCGA
CATATTCATCGATGATAATACACTTAACGTGTATATCACGCGGCTCAGAAAAAAACTGCGGGAGCTGAATGCGCCTGTTT
CTATTGAAGCGGTGCGGGGCGAAGGCTACCAGCTGAGGGCGCAGTCATGA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-225)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P42421

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

41.704

97.38

0.406

Multiple sequence alignment