Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   QCM40_RS03885 Genome accession   NZ_CP122516
Coordinates   784897..786822 (-) Length   641 a.a.
NCBI ID   WP_279956537.1    Uniprot ID   -
Organism   Helicobacter pylori strain HP34     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 779897..791822
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QCM40_RS03875 (QCM40_03875) - 779985..782567 (-) 2583 WP_279956535.1 DNA translocase FtsK -
  QCM40_RS03880 (QCM40_03880) addB 782564..784900 (-) 2337 WP_279956536.1 ATP-dependent deoxyribonuclease AddB -
  QCM40_RS03885 (QCM40_03885) recP/tkt 784897..786822 (-) 1926 WP_279956537.1 transketolase Machinery gene
  QCM40_RS03890 (QCM40_03890) - 786869..787711 (-) 843 WP_121294535.1 bifunctional riboflavin kinase/FAD synthetase -
  QCM40_RS03895 (QCM40_03895) - 787677..788384 (-) 708 WP_121294536.1 TlyA family RNA methyltransferase -
  QCM40_RS03900 (QCM40_03900) - 788384..788899 (-) 516 WP_000523553.1 hypothetical protein -
  QCM40_RS03905 (QCM40_03905) pyrB 788966..789889 (+) 924 WP_140466823.1 aspartate carbamoyltransferase -
  QCM40_RS03910 (QCM40_03910) hofB 790184..791623 (+) 1440 WP_279956538.1 outer membrane beta-barrel protein HofB -

Sequence

Protein


Download         Length: 641 a.a.        Molecular weight: 70544.77 Da        Isoelectric Point: 6.7372

>NTDB_id=740997 QCM40_RS03885 WP_279956537.1 784897..786822(-) (recP/tkt) [Helicobacter pylori strain HP34]
MRLSNADLERLKSMVNTLRFLCADMIDKANSGHPGVCLGLADVMVVLSLHLNINPTNPKWLNRDRLVFSGGHASALAYSL
LHLWGFDLSLEDLKRFRQLHSKTPGHPELHHTEGIEITTGPLGQGFANAVGFSMASQYAQNLLNKEAISHKVYCLCGDGD
LQEGISYESASLAGHLRLDNLIVIYDSNQISIEGAINISFSEQVKTRFLAQNWEVLECDGHDYQAIHDALEEAKKSPKPT
LLIAHTIIGKGAIGLEGSEKTHGSPLNKEVLKQSKENAQINPDESFIISPKNKMHFEEVKVRGVSLEALWEKSLNPKTKE
KIHALKNFDFNAINYPAFKKGESLATRVSNGMILNAIAKECEGFLGGSADLAPSNNTHLKHSGDFPLGQNLHFGIREHAM
GAITNALAAYGLFLPFCATFFVFSDYLMPSMRLSALMKLKALFIFTHDSIGVGEDGATHQPIEQLSHLRALPNFYAFRPS
DAFENTACMQVALSLNAPSALILSRQNLPVLDEVSKEQVLKGAYVKHHSKDPIITLVASGSEVSLALESAKILERENIPT
QVVSAPCFDLLIEQDGSYFKELFKGKVLVIEASRAIEWYRFADKIIGMDSFGSSAKGDKLFEKFGFSVENVTAQAKRLLN
A

Nucleotide


Download         Length: 1926 bp        

>NTDB_id=740997 QCM40_RS03885 WP_279956537.1 784897..786822(-) (recP/tkt) [Helicobacter pylori strain HP34]
ATGCGATTGAGTAACGCTGACTTAGAACGATTAAAAAGCATGGTCAACACGCTGCGCTTTTTGTGTGCGGACATGATAGA
TAAGGCTAATAGCGGGCATCCGGGCGTGTGCTTGGGATTAGCCGATGTGATGGTGGTTTTAAGCTTGCACCTGAACATTA
ACCCCACTAACCCTAAATGGCTTAATAGAGACAGGCTGGTTTTTAGCGGAGGGCATGCGAGCGCGTTAGCGTATAGTTTG
TTGCATTTGTGGGGCTTTGATTTGAGTTTAGAAGATTTAAAGCGTTTCAGGCAATTACACTCTAAAACCCCAGGACACCC
CGAATTGCACCACACCGAAGGCATTGAAATCACGACAGGCCCTTTGGGGCAAGGTTTTGCTAACGCTGTGGGCTTTAGCA
TGGCGAGTCAATACGCTCAAAATCTTTTAAATAAAGAAGCCATTTCTCATAAAGTCTATTGCTTGTGTGGGGATGGGGAT
TTGCAAGAAGGCATTAGTTATGAGAGTGCTTCTTTAGCCGGGCATCTTCGCCTTGATAACCTCATTGTGATTTATGACAG
CAACCAGATAAGCATTGAAGGTGCTATTAATATTAGTTTTAGCGAACAGGTTAAAACTCGTTTTTTAGCGCAAAATTGGG
AAGTGCTAGAATGCGATGGGCATGACTATCAAGCGATTCATGATGCTTTAGAAGAAGCCAAAAAATCCCCTAAACCCACG
CTTTTAATCGCTCATACGATCATTGGTAAGGGGGCTATTGGTTTAGAGGGGAGTGAAAAAACGCATGGCTCACCTTTAAA
TAAAGAAGTGTTGAAACAATCCAAAGAAAACGCTCAAATCAATCCTGATGAAAGCTTTATCATTAGCCCAAAAAACAAAA
TGCATTTTGAAGAAGTGAAAGTTAGGGGCGTTAGTTTAGAAGCCTTATGGGAAAAGTCCTTAAACCCTAAAACAAAAGAA
AAAATCCATGCGTTGAAGAATTTTGATTTTAACGCCATTAATTACCCCGCCTTTAAAAAAGGCGAATCTCTAGCCACGAG
AGTGAGTAACGGCATGATTTTAAACGCTATCGCCAAAGAATGCGAGGGCTTTTTGGGGGGGAGCGCGGATTTAGCCCCCT
CTAATAACACGCATTTGAAACATTCTGGCGATTTCCCTTTGGGGCAAAACCTGCATTTTGGGATCAGAGAGCATGCCATG
GGGGCTATCACTAACGCTTTAGCGGCGTATGGCTTGTTTTTGCCTTTTTGCGCGACCTTTTTTGTGTTTAGCGATTATTT
AATGCCTAGCATGCGTTTGAGCGCTTTAATGAAATTAAAAGCCCTTTTTATCTTCACGCATGACAGCATTGGCGTGGGCG
AAGACGGAGCGACGCACCAACCCATAGAGCAATTGAGCCATTTACGCGCTTTGCCCAACTTCTATGCTTTCAGGCCTAGC
GACGCTTTTGAAAATACGGCTTGCATGCAAGTGGCGTTAAGTTTGAACGCTCCTAGCGCTCTTATTTTATCGCGCCAGAA
TTTGCCCGTGCTTGATGAGGTCTCTAAAGAGCAGGTTTTAAAAGGGGCGTATGTTAAACACCATTCTAAAGATCCCATTA
TCACGCTTGTTGCGAGCGGGAGCGAAGTCTCTTTAGCTTTAGAGAGCGCTAAGATTTTAGAGCGAGAAAATATCCCCACT
CAAGTGGTGAGCGCGCCATGCTTTGATTTATTGATAGAGCAAGATGGAAGCTATTTTAAAGAACTCTTTAAGGGCAAAGT
CTTAGTCATTGAAGCGAGCCGCGCGATAGAGTGGTATCGTTTTGCGGATAAAATCATTGGCATGGATTCTTTTGGGAGTT
CGGCAAAGGGCGATAAACTCTTTGAAAAATTTGGCTTTAGCGTTGAAAACGTTACCGCTCAAGCTAAAAGGTTACTCAAC
GCATGA

Domains

Predicted by InterProScan.

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(12-321)

Transketolase, pyrimidine binding domain (Transket_pyr)

(343-509)

Transketolase, C-terminal domain (Transketolase_C)

(524-574)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

41.258

100

0.42