Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   QCM40_RS00085 Genome accession   NZ_CP122516
Coordinates   19491..20540 (+) Length   349 a.a.
NCBI ID   WP_279955420.1    Uniprot ID   -
Organism   Helicobacter pylori strain HP34     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 14491..25540
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QCM40_RS00070 (QCM40_00070) - 15380..16639 (-) 1260 WP_279955415.1 DUF874 family protein -
  QCM40_RS00075 (QCM40_00075) asd 17074..18114 (-) 1041 WP_279955416.1 aspartate-semialdehyde dehydrogenase -
  QCM40_RS00080 (QCM40_00080) hisS 18101..19429 (-) 1329 WP_279955418.1 histidine--tRNA ligase -
  QCM40_RS00085 (QCM40_00085) waaF 19491..20540 (+) 1050 WP_279955420.1 lipopolysaccharide heptosyltransferase II Regulator
  QCM40_RS00090 (QCM40_00090) - 20726..20890 (-) 165 WP_000744175.1 hypothetical protein -
  QCM40_RS00095 (QCM40_00095) fusA 21438..23516 (-) 2079 WP_279955421.1 elongation factor G -
  QCM40_RS00100 (QCM40_00100) rpsG 23528..23995 (-) 468 WP_097556332.1 30S ribosomal protein S7 -
  QCM40_RS00105 (QCM40_00105) rpsL 24011..24418 (-) 408 WP_001142321.1 30S ribosomal protein S12 -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39495.24 Da        Isoelectric Point: 9.5545

>NTDB_id=740973 QCM40_RS00085 WP_279955420.1 19491..20540(+) (waaF) [Helicobacter pylori strain HP34]
MSVNAPKRMRILLRLPNWLGDGVMASSLFYTLKHHYPNAHFILVGSAITCELFKKDEKIEAVFIDDTKKSFFRLLATYKL
AQKIGRCDIAIALNNHFYSAFLLYATKTPVRIGFAQFFRSLFLSHAITAAPKEYHQVEKYCFLFSQFLKKELDQKSVLPL
KLAFNLPIHTPNTPKKIGFNPSASYGSAKRWPASYYAEVSATLLEKGHEIYFFGAKEDAIVSEEILKLIKGLLKNPLLFN
NAYNLCGKTSIEELIERIAILDLFITNDSGPMHVAASTQTPLIALFGPTDEKETRPYKAQKTIVLNHHLSCSPCKKRVCP
LKNEKNHLCMKSITPLEVLQAAHTLLEEP

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=740973 QCM40_RS00085 WP_279955420.1 19491..20540(+) (waaF) [Helicobacter pylori strain HP34]
ATGAGCGTAAATGCGCCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGTTAGGCGATGGGGTGATGGCAAGCTC
GCTTTTTTACACCCTTAAACACCACTACCCTAACGCACATTTTATCTTAGTGGGTTCAGCCATTACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTCATAGACGACACCAAAAAATCTTTTTTCAGGCTGTTAGCCACTTACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCGCATTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCTGTTCGCATCGGTTTTGCTCAATTTTTCCGTTCTTTGTTTCTCAGCCATGCGATAACTGCTGCCCCTAAAGAGT
ATCATCAAGTGGAAAAGTATTGCTTTTTGTTTTCGCAATTTTTAAAAAAAGAATTAGATCAAAAAAGCGTTTTACCCTTA
AAATTAGCCTTTAACCTCCCCATTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGCGCAAGCTATGGGAG
CGCTAAAAGATGGCCGGCTTCTTATTACGCTGAAGTTTCTGCTACTTTGTTGGAAAAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGACGCTATCGTTTCTGAAGAAATTTTAAAACTCATCAAAGGCTTATTAAAAAACCCCTTATTATTCAAT
AACGCTTACAATCTGTGCGGGAAAACAAGCATTGAAGAATTGATAGAGCGCATCGCCATTTTGGATTTATTCATCACTAA
CGATAGCGGTCCTATGCATGTGGCTGCTAGCACACAAACCCCCTTAATCGCTCTTTTTGGCCCCACTGATGAAAAAGAAA
CTCGCCCCTATAAAGCTCAAAAAACGATCGTATTGAACCACCATTTAAGCTGTTCGCCCTGCAAGAAACGAGTTTGCCCC
TTAAAGAATGAAAAAAACCATTTGTGCATGAAATCTATCACGCCCCTTGAAGTCCTTCAAGCCGCTCACACTCTTTTAGA
AGAGCCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

37.941

97.421

0.37