Detailed information NTG0740968

Bioinformatically predicted

Overview

• Name: xcpW
• Type: Machinery gene
• Locus tag: OIO72_RS09115
• Genome accession: NZ_CP107585
• Coordinates: 1866975..1867676 (+)
• Length: 233 a.a.
• NCBI ID: WP_000594580.1
• Uniprot ID: A0A836YMN8
• Organism: Acinetobacter baumannii strain 1326527-1
• Function: pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1861975..1872676

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OIO72_RS09080 (OIO72_09085)	kdsB	1862498..1863259 (+)	762	WP_000680701.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
OIO72_RS09085 (OIO72_09090)	-	1863271..1864251 (+)	981	WP_001075416.1	DNA polymerase III subunit delta'	-
OIO72_RS09090 (OIO72_09095)	-	1864263..1864604 (+)	342	WP_001183024.1	PilZ domain-containing protein	-
OIO72_RS09095 (OIO72_09100)	-	1864622..1865395 (+)	774	WP_000497298.1	TatD family hydrolase	-
OIO72_RS09100 (OIO72_09105)	-	1865433..1866041 (+)	609	WP_000375838.1	TetR/AcrR family transcriptional regulator	-
OIO72_RS09105 (OIO72_09110)	-	1866051..1866605 (+)	555	WP_000841367.1	type II secretion system protein	-
OIO72_RS09110 (OIO72_09115)	xcpV	1866595..1866975 (+)	381	WP_000836911.1	type II secretion system minor pseudopilin GspI	Machinery gene
OIO72_RS09115 (OIO72_09120)	xcpW	1866975..1867676 (+)	702	WP_000594580.1	type II secretion system minor pseudopilin GspJ	Machinery gene
OIO72_RS09120 (OIO72_09125)	gspK	1867676..1868635 (+)	960	WP_031960447.1	type II secretion system minor pseudopilin GspK	-
OIO72_RS09125 (OIO72_09130)	-	1868865..1869461 (+)	597	WP_000908453.1	6-carboxytetrahydropterin synthase	-
OIO72_RS09130 (OIO72_09135)	ung	1869512..1870225 (+)	714	WP_001177528.1	uracil-DNA glycosylase	-
OIO72_RS09135 (OIO72_09140)	-	1870222..1871346 (+)	1125	WP_109067466.1	enoyl-CoA hydratase/isomerase family protein	-
OIO72_RS09140 (OIO72_09145)	tadA	1871353..1871856 (+)	504	WP_031960449.1	tRNA adenosine(34) deaminase TadA	-
OIO72_RS09145 (OIO72_09150)	-	1871926..1872369 (+)	444	WP_031960450.1	SRPBCC family protein	-

Sequence

Protein

• Length: 233 a.a.
• Molecular weight: 26673.64 Da
• Isoelectric Point: 9.5501

>NTDB_id=740968 OIO72_RS09115 WP_000594580.1 1866975..1867676(+) (xcpW) [Acinetobacter baumannii strain 1326527-1]
MIKNKYIHIRSFSSRLAARSSSARLTRVSGFTLVELLVAIAIFAVLSLLGWKIFDYLLKVRDRNAEHEVHLFELQDAYQQ
ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS
STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQEGNS

Nucleotide

• Length: 702 bp

>NTDB_id=740968 OIO72_RS09115 WP_000594580.1 1866975..1867676(+) (xcpW) [Acinetobacter baumannii strain 1326527-1]
ATGATAAAAAATAAATATATTCACATCCGAAGCTTTTCTTCTCGTCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG
CGTCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT
TCGATTACTTGCTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA
ATTCTTCGTGATACTTTGCAAATTATCCCTTTATCCGCAAACCAAGGTGGGCAACTTCATCCAGCTTTAGAAATCGATAA
TCAAATTTTACGTTTTAGTAAAGCTGGGGTAACAGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC
GTTATGATGCAGATCAAAAAAAACTATATCGTCTTAAATATACAAATTTAAATACTTCGAACAGAGAGCAACCTTTATCG
AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA
TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT
ATGAATGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCACAGGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein J (T2SSJ) (83-212)

• Prokaryotic N-terminal methylation motif (N_methyl) (27-49)

3D structure

• AlphaFold DB: A0A836YMN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
xcpW	Acinetobacter baumannii D1279779	98.712	100	0.987