Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   QC806_RS14730 Genome accession   NZ_CP122507
Coordinates   2968336..2968965 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain W444     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2963336..2973965
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QC806_RS14715 helD 2963578..2965632 (-) 2055 WP_001295354.1 DNA helicase IV -
  QC806_RS14720 yccF 2965755..2966201 (+) 447 WP_001261235.1 YccF domain-containing protein -
  QC806_RS14725 yccS 2966211..2968373 (+) 2163 WP_000875061.1 YccS family putative transporter -
  QC806_RS14730 sxy/tfoX 2968336..2968965 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  QC806_RS14735 sulA 2969184..2969693 (+) 510 WP_001554869.1 SOS-induced cell division inhibitor SulA -
  QC806_RS14740 ompA 2970050..2971090 (+) 1041 WP_239638110.1 porin OmpA -
  QC806_RS14745 matP 2971166..2971618 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  QC806_RS14750 ycbZ 2971804..2973564 (+) 1761 WP_000156518.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=740900 QC806_RS14730 WP_000839153.1 2968336..2968965(-) (sxy/tfoX) [Escherichia coli strain W444]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=740900 QC806_RS14730 WP_000839153.1 2968336..2968965(-) (sxy/tfoX) [Escherichia coli strain W444]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1