Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   OIO53_RS17455 Genome accession   NZ_CP107579
Coordinates   3621405..3622046 (-) Length   213 a.a.
NCBI ID   WP_031961396.1    Uniprot ID   A0A836M414
Organism   Acinetobacter baumannii strain 1326525-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3616405..3627046
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OIO53_RS17435 (OIO53_17440) aroK 3617321..3617890 (-) 570 WP_000643712.1 shikimate kinase AroK -
  OIO53_RS17440 (OIO53_17445) - 3617902..3620067 (-) 2166 Protein_3410 type IV pilus secretin PilQ -
  OIO53_RS17445 (OIO53_17450) pilP 3620130..3620657 (-) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  OIO53_RS17450 (OIO53_17455) pilO 3620668..3621408 (-) 741 WP_000076106.1 type 4a pilus biogenesis protein PilO Machinery gene
  OIO53_RS17455 (OIO53_17460) pilN 3621405..3622046 (-) 642 WP_031961396.1 PilN domain-containing protein Machinery gene
  OIO53_RS17460 (OIO53_17465) pilM 3622046..3623104 (-) 1059 WP_031961398.1 pilus assembly protein PilM Machinery gene
  OIO53_RS17465 (OIO53_17470) ponA 3623266..3625821 (+) 2556 WP_031965088.1 penicillin-binding protein PBP1a -
  OIO53_RS17470 (OIO53_17475) - 3625839..3626663 (-) 825 WP_002019666.1 putative RNA methyltransferase -
  OIO53_RS17475 (OIO53_17480) - 3626666..3626998 (-) 333 WP_000169602.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23931.29 Da        Isoelectric Point: 5.8563

>NTDB_id=740863 OIO53_RS17455 WP_031961396.1 3621405..3622046(-) (pilN) [Acinetobacter baumannii strain 1326525-1]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIMSTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPPAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
NEEKKDKAASSLLPRVEDHYGSFVVTVDLGEMGVATTDDSAKTSTGGSVGAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=740863 OIO53_RS17455 WP_031961396.1 3621405..3622046(-) (pilN) [Acinetobacter baumannii strain 1326525-1]
ATGGCAACAATTAATTTACTGCCTTGGCGCGAAGAGCTGAGGGAGCAACGAAAAAAACAATTTATAACGTTATGTTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGGGGATGGTTTTATTTTGACCATAAATTAGATGATCAAGAGCAAGCGA
ATCAGCTCATTATGAGCACAAATCAGAACCTTGATCAGCAATTAAAAACATTAAACGGCTTACAGGAACAGCGTGATGCC
ATTATTGAACGCATGAAGTTGATCCAAGGTTTGCAGAGTCAACGTCCAGTAGTGGTAAGACTTGTTGATGAGTTAGTTCG
AGTCACACCACCAGCTATGTATTTAACGAAATTTAGCCGAACCGGAGATAAGTTTACGATTGAAGGTAAAGCTGAGAGTC
CAAATACAGTAGCCGAACTACTCCGTAATCTTGAAGCATCTCCTTGGTATCGTAATGCTTTTATGAACTCTTTCTTGGCT
AATGAAGAGAAAAAAGATAAGGCTGCAAGTTCTCTTCTTCCTAGGGTGGAAGACCACTATGGTAGTTTTGTTGTGACTGT
CGATTTGGGGGAAATGGGCGTGGCCACAACGGATGATTCTGCTAAGACATCTACAGGTGGAAGTGTGGGGGCTGCTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A836M414

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

98.122

100

0.981
  comN Acinetobacter baylyi ADP1

71.77

98.122

0.704