Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | OIO53_RS09075 | Genome accession | NZ_CP107579 |
| Coordinates | 1862174..1862554 (+) | Length | 126 a.a. |
| NCBI ID | WP_000836911.1 | Uniprot ID | - |
| Organism | Acinetobacter baumannii strain 1326525-1 | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1857174..1867554
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OIO53_RS09045 (OIO53_09050) | kdsB | 1858077..1858838 (+) | 762 | WP_000680701.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
| OIO53_RS09050 (OIO53_09055) | - | 1858850..1859830 (+) | 981 | WP_001075416.1 | DNA polymerase III subunit delta' | - |
| OIO53_RS09055 (OIO53_09060) | - | 1859842..1860183 (+) | 342 | WP_001183024.1 | PilZ domain-containing protein | - |
| OIO53_RS09060 (OIO53_09065) | - | 1860201..1860974 (+) | 774 | WP_000497298.1 | TatD family hydrolase | - |
| OIO53_RS09065 (OIO53_09070) | - | 1861012..1861620 (+) | 609 | WP_000375838.1 | TetR/AcrR family transcriptional regulator | - |
| OIO53_RS09070 (OIO53_09075) | - | 1861630..1862184 (+) | 555 | WP_000841367.1 | type II secretion system protein | - |
| OIO53_RS09075 (OIO53_09080) | xcpV | 1862174..1862554 (+) | 381 | WP_000836911.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| OIO53_RS09080 (OIO53_09085) | xcpW | 1862554..1863255 (+) | 702 | WP_000594580.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| OIO53_RS09085 (OIO53_09090) | gspK | 1863255..1864214 (+) | 960 | WP_031960447.1 | type II secretion system minor pseudopilin GspK | - |
| OIO53_RS09090 (OIO53_09095) | - | 1864444..1865040 (+) | 597 | WP_000908453.1 | 6-carboxytetrahydropterin synthase | - |
| OIO53_RS09095 (OIO53_09100) | ung | 1865091..1865804 (+) | 714 | WP_001177528.1 | uracil-DNA glycosylase | - |
| OIO53_RS09100 (OIO53_09105) | - | 1865801..1866925 (+) | 1125 | WP_109067466.1 | enoyl-CoA hydratase/isomerase family protein | - |
| OIO53_RS09105 (OIO53_09110) | tadA | 1866932..1867435 (+) | 504 | WP_031960449.1 | tRNA adenosine(34) deaminase TadA | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 13975.20 Da Isoelectric Point: 9.8004
>NTDB_id=740850 OIO53_RS09075 WP_000836911.1 1862174..1862554(+) (xcpV) [Acinetobacter baumannii strain 1326525-1]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
Nucleotide
Download Length: 381 bp
>NTDB_id=740850 OIO53_RS09075 WP_000836911.1 1862174..1862554(+) (xcpV) [Acinetobacter baumannii strain 1326525-1]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCTGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACTAAAGCTCAGTTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACTCAAAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCTGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACTAAAGCTCAGTTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACTCAAAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
100 |
100 |
1 |