Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   QC808_RS16865 Genome accession   NZ_CP122503
Coordinates   3516567..3517172 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain W619     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3511567..3522172
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QC808_RS16845 aes 3511604..3512563 (+) 960 WP_000801832.1 acetyl esterase -
  QC808_RS16850 hemH 3512560..3513522 (-) 963 WP_001250088.1 ferrochelatase -
  QC808_RS16855 adk 3513758..3514402 (-) 645 WP_001220233.1 adenylate kinase -
  QC808_RS16860 htpG 3514583..3516457 (-) 1875 WP_000678208.1 molecular chaperone HtpG -
  QC808_RS16865 recR 3516567..3517172 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  QC808_RS16870 ybaB 3517172..3517501 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  QC808_RS16875 dnaX 3517554..3519485 (-) 1932 WP_000122008.1 DNA polymerase III subunit gamma/tau -
  QC808_RS16880 apt 3519614..3520165 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  QC808_RS16885 ybaN 3520318..3520695 (-) 378 WP_001188905.1 DUF454 family protein -
  QC808_RS16890 priC 3520765..3521292 (+) 528 WP_000844848.1 primosomal replication protein N'' -
  QC808_RS16895 rsmS 3521306..3521467 (+) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  QC808_RS16900 - 3521520..3521618 (-) 99 Protein_3308 hypothetical protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=740825 QC808_RS16865 WP_001195025.1 3516567..3517172(-) (recR) [Escherichia coli strain W619]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=740825 QC808_RS16865 WP_001195025.1 3516567..3517172(-) (recR) [Escherichia coli strain W619]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443