Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   QC808_RS14470 Genome accession   NZ_CP122503
Coordinates   2995124..2995753 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain W619     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2990124..3000753
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QC808_RS14455 helD 2990366..2992420 (-) 2055 WP_000420536.1 DNA helicase IV -
  QC808_RS14460 yccF 2992543..2992989 (+) 447 WP_001261235.1 YccF domain-containing protein -
  QC808_RS14465 yccS 2992999..2995161 (+) 2163 WP_000323868.1 YccS family putative transporter -
  QC808_RS14470 sxy/tfoX 2995124..2995753 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  QC808_RS14475 sulA 2995972..2996481 (+) 510 WP_000288706.1 SOS-induced cell division inhibitor SulA -
  QC808_RS14480 ompA 2996838..2997893 (+) 1056 WP_000750414.1 porin OmpA -
  QC808_RS14485 matP 2997971..2998423 (-) 453 WP_000877158.1 macrodomain Ter protein MatP -
  QC808_RS14490 ycbZ 2998609..3000369 (+) 1761 WP_021556661.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=740818 QC808_RS14470 WP_000839153.1 2995124..2995753(-) (sxy/tfoX) [Escherichia coli strain W619]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=740818 QC808_RS14470 WP_000839153.1 2995124..2995753(-) (sxy/tfoX) [Escherichia coli strain W619]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTATATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1