Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   jpw_RS24950 Genome accession   NZ_CP107576
Coordinates   5455668..5457158 (+) Length   496 a.a.
NCBI ID   WP_085592358.1    Uniprot ID   A0AAJ5IGP5
Organism   Pseudomonas asiatica strain JP233     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 5450668..5462158
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  jpw_RS24920 (jpw_24920) - 5451132..5451827 (+) 696 WP_013974747.1 HAD family hydrolase -
  jpw_RS24925 (jpw_24925) sutA 5452008..5452337 (-) 330 WP_013974748.1 transcriptional regulator SutA -
  jpw_RS24930 (jpw_24930) - 5452767..5454098 (-) 1332 WP_015272254.1 ammonium transporter -
  jpw_RS24935 (jpw_24935) glnK 5454145..5454483 (-) 339 WP_002555808.1 P-II family nitrogen regulator -
  jpw_RS24940 (jpw_24940) - 5454885..5455151 (+) 267 WP_015272255.1 accessory factor UbiK family protein -
  jpw_RS24945 (jpw_24945) - 5455152..5455505 (+) 354 WP_015272256.1 gamma-glutamylcyclotransferase family protein -
  jpw_RS24950 (jpw_24950) comM 5455668..5457158 (+) 1491 WP_085592358.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  jpw_RS24955 (jpw_24955) - 5457368..5457736 (-) 369 WP_015272300.1 response regulator transcription factor -
  jpw_RS24960 (jpw_24960) - 5457733..5458725 (-) 993 WP_015272301.1 response regulator -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 52808.51 Da        Isoelectric Point: 7.7255

>NTDB_id=740784 jpw_RS24950 WP_085592358.1 5455668..5457158(+) (comM) [Pseudomonas asiatica strain JP233]
MSLALVHSRAQVGVQAPAVSVETHLANGLPHLTLVGLPETTVKESKDRVRSAIVNSGLNYPQRRITQNLAPADLPKDGGR
YDLAIALGILAADGQVPTATLAEVECLGELALSGKLRPVQGVLPAALAAREAGRALVVPRENAEEASLAGGLVVYAVGHL
LELVAHLNGQVPLPPYAANGLILQQRPYPDLSEVQGQLAAKRALLLAAAGAHNLLFTGPPGTGKTLLASRLPGLLPPLDE
HEALEVAAIQSVSGHTPLSSWPQRPFRHPHHSASGPALVGGSSRPQPGEITLAHHGVLFLDELPEFERRVLEVLREPLES
GEIVIARARDKVRFPARFQLVAAMNPCPCGYLGDPTGRCRCSTEQIARYRNKLSGPLLDRIDLHLTVARESTTLNNQPCG
ETSADVAAKVAEARELQQRRQGCANAFLDLEGLRRHCGLAAADQAWLEGACERLTLSLRAAHRLLKVARTLADLEGSQAI
GRAHLAEALQYRPGSS

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=740784 jpw_RS24950 WP_085592358.1 5455668..5457158(+) (comM) [Pseudomonas asiatica strain JP233]
ATGTCCCTAGCCCTCGTCCACAGCCGCGCCCAGGTGGGCGTGCAGGCACCGGCGGTCAGCGTCGAAACCCACCTGGCCAA
CGGCTTGCCCCATCTCACGCTGGTCGGTCTGCCGGAAACCACGGTCAAAGAGAGCAAGGACCGGGTACGCAGCGCCATCG
TCAACTCCGGTTTGAACTACCCGCAGCGGCGCATCACCCAGAACCTCGCCCCCGCCGACCTGCCCAAGGATGGCGGGCGC
TATGACCTGGCAATTGCCCTGGGTATCCTCGCCGCCGATGGCCAGGTACCAACGGCCACCCTTGCCGAGGTCGAATGCCT
GGGCGAACTGGCGCTGTCTGGCAAGTTGCGCCCGGTGCAGGGCGTGTTGCCCGCAGCACTGGCGGCACGCGAAGCAGGCC
GGGCGCTGGTGGTGCCGCGGGAGAATGCCGAGGAAGCCAGCCTGGCAGGCGGGCTGGTGGTGTATGCGGTGGGGCACCTG
CTGGAACTGGTCGCCCACCTGAACGGCCAGGTGCCATTGCCACCGTATGCCGCCAACGGCCTGATCCTGCAGCAACGTCC
GTACCCGGACCTGAGCGAAGTGCAGGGCCAACTGGCGGCCAAGCGTGCGCTGCTGCTAGCGGCGGCCGGGGCGCACAACC
TTTTGTTCACCGGGCCTCCCGGTACCGGCAAGACCTTGCTTGCCAGCCGCTTGCCGGGGCTGCTGCCACCACTGGACGAG
CACGAAGCACTGGAAGTGGCGGCGATACAGTCGGTCAGCGGCCATACGCCACTGAGCAGCTGGCCGCAGCGGCCCTTCCG
CCATCCGCATCACTCCGCCTCCGGCCCGGCACTGGTCGGCGGCAGCAGCCGGCCGCAACCGGGCGAAATCACCCTCGCCC
ACCATGGCGTGCTGTTTCTGGATGAACTACCTGAGTTCGAGCGTCGCGTGCTGGAAGTGTTGCGCGAACCGCTGGAGTCG
GGCGAGATCGTGATTGCCCGGGCCCGCGACAAGGTGCGCTTCCCCGCACGTTTCCAGCTGGTGGCGGCAATGAACCCCTG
CCCTTGCGGCTATCTGGGCGACCCCACTGGCCGCTGCCGCTGCAGTACCGAGCAGATCGCGCGGTATCGCAACAAGCTGT
CCGGGCCGTTGCTGGACCGTATCGACCTGCACCTGACCGTGGCCCGGGAGAGCACCACGCTGAACAACCAGCCCTGCGGC
GAGACCAGTGCCGATGTGGCGGCCAAGGTAGCCGAGGCACGTGAACTGCAACAGCGGCGGCAAGGGTGTGCGAATGCGTT
TCTCGACCTTGAGGGGTTGCGCCGCCATTGTGGCTTGGCAGCGGCGGACCAGGCCTGGCTGGAGGGGGCATGTGAACGGC
TGACCCTGTCGTTGCGCGCGGCACACCGGTTGCTGAAGGTGGCGCGGACGCTGGCGGATCTGGAAGGTAGCCAGGCAATT
GGCCGGGCGCATCTGGCCGAGGCCCTGCAGTACCGGCCGGGGAGCAGTTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

55.6

100

0.56
  comM Vibrio campbellii strain DS40M4

55.758

99.798

0.556
  comM Vibrio cholerae strain A1552

55.152

99.798

0.55
  comM Glaesserella parasuis strain SC1401

53.892

100

0.544
  comM Legionella pneumophila str. Paris

49.395

100

0.494
  comM Legionella pneumophila strain ERS1305867

49.395

100

0.494
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.813

100

0.474