Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   QC809_RS17340 Genome accession   NZ_CP122499
Coordinates   3479700..3480305 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain W409     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3474700..3485305
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QC809_RS17320 aes 3474737..3475696 (+) 960 WP_000801813.1 acetyl esterase -
  QC809_RS17325 hemH 3475693..3476655 (-) 963 WP_001250103.1 ferrochelatase -
  QC809_RS17330 adk 3476891..3477535 (-) 645 WP_001220233.1 adenylate kinase -
  QC809_RS17335 htpG 3477716..3479590 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  QC809_RS17340 recR 3479700..3480305 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  QC809_RS17345 ybaB 3480305..3480634 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  QC809_RS17350 dnaX 3480687..3482618 (-) 1932 WP_000122013.1 DNA polymerase III subunit gamma/tau -
  QC809_RS17355 apt 3482747..3483298 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  QC809_RS17360 ybaN 3483451..3483828 (-) 378 WP_001188905.1 DUF454 family protein -
  QC809_RS17365 priC 3483898..3484425 (+) 528 WP_063084507.1 primosomal replication protein N'' -
  QC809_RS17370 rsmS 3484439..3484600 (+) 162 WP_000051152.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=740745 QC809_RS17340 WP_001195025.1 3479700..3480305(-) (recR) [Escherichia coli strain W409]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=740745 QC809_RS17340 WP_001195025.1 3479700..3480305(-) (recR) [Escherichia coli strain W409]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTTCCGGTTGGCGGCGAGCTAGAAATGGTCGACGGCAC
CACGTTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443