Detailed information NTG0740640

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: OGL87_RS06160
• Genome accession: NZ_CP107557
• Coordinates: 1204050..1205195 (-)
• Length: 381 a.a.
• NCBI ID: WP_074534220.1
• Uniprot ID: -
• Organism: Bacillus velezensis strain CPA1-1
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 1199050..1210195

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OGL87_RS06135 (OGL87_06135)	-	1199333..1199766 (+)	434	Protein_1161	hypothetical protein	-
OGL87_RS06140 (OGL87_06140)	-	1199791..1201863 (-)	2073	WP_032875881.1	transglycosylase domain-containing protein	-
OGL87_RS06145 (OGL87_06145)	speE	1202063..1202893 (+)	831	WP_003151052.1	spermidine synthase	-
OGL87_RS06150 (OGL87_06150)	speB	1202952..1203824 (+)	873	WP_032875884.1	agmatinase	-
OGL87_RS06155 (OGL87_06155)	-	1203947..1204066 (-)	120	WP_017418707.1	PhrC/PhrF family phosphatase-inhibitory pheromone	-
OGL87_RS06160 (OGL87_06160)	rapF	1204050..1205195 (-)	1146	WP_074534220.1	Rap family tetratricopeptide repeat protein	Regulator
OGL87_RS06165 (OGL87_06165)	-	1205426..1206781 (+)	1356	WP_032875887.1	YncE family protein	-
OGL87_RS06170 (OGL87_06170)	-	1206821..1208197 (+)	1377	WP_032875890.1	YncE family protein	-
OGL87_RS06175 (OGL87_06175)	-	1208204..1208716 (-)	513	Protein_1169	bacteriocin biosynthesis protein AlbG	-
OGL87_RS06180 (OGL87_06180)	-	1208870..1209298 (+)	429	WP_032869448.1	DUF1934 domain-containing protein	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 45737.21 Da
• Isoelectric Point: 5.0614

>NTDB_id=740640 OGL87_RS06160 WP_074534220.1 1204050..1205195(-) (rapF) [Bacillus velezensis strain CPA1-1]
MASVLSSSAVGEKINEWYMYIRRFSIPDAEYLRREIKEELAGLEDDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSDLLADIDKKQARLTGRLDYYFNFFRGMYELECREYLSAIQFFKKAESKLTYVKDHIEKAEFYFKMSEVYYYMKQTYVS
MDYARQAYLIYKDAEKYNIRLTQCHSLFGANYLDVKQYDHAISHFQKAYTMAELEQQPQLMGRTLFNIALCHNNQNNKVE
AIPHLKEAIAVFEKAQMSHSLPQPYFLLTQIYFKLKNIDNAYDYHKKGISICKEIDDIIYEEKFKFLEYLYMPDPRDTLI
NDCLHFLENKLMYADIEELALDVAKYYYTQEEYKKASVYFLKVEEARQQIEGGVNLYEIEV

Nucleotide

• Length: 1146 bp

>NTDB_id=740640 OGL87_RS06160 WP_074534220.1 1204050..1205195(-) (rapF) [Bacillus velezensis strain CPA1-1]
GTGGCGAGTGTTTTATCATCTTCAGCGGTTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTACTTGCGGAGAGAAATCAAAGAAGAACTTGCAGGTCTGGAAGATGATCAGGATCTTCATCTATACTATT
CTCTCATGGAATTCCGTCACAATCTGATGCTCGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCGGATCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGTCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGAATGCCGTGAATATCTTTCAGCGATTCAGTTTTTTAAGAAAGCTGAAAGCAAACTGACGTACG
TTAAAGATCATATAGAAAAAGCTGAATTTTACTTTAAAATGTCAGAAGTCTATTATTATATGAAACAAACTTATGTATCG
ATGGATTATGCGCGGCAGGCTTATTTAATTTATAAAGATGCAGAAAAATATAATATTAGATTAACCCAGTGCCATTCTTT
ATTTGGGGCTAATTATCTTGATGTAAAGCAATACGATCACGCGATTTCCCACTTTCAAAAGGCATATACGATGGCTGAAT
TGGAGCAGCAGCCGCAATTAATGGGGAGGACACTTTTTAACATCGCTTTATGCCATAATAATCAAAACAATAAAGTCGAG
GCTATTCCCCATTTAAAAGAAGCCATAGCTGTTTTTGAAAAAGCTCAAATGAGTCATTCACTTCCGCAGCCCTACTTCTT
ACTTACACAGATTTATTTTAAGTTAAAAAATATAGATAACGCGTACGATTATCATAAAAAAGGTATCTCAATATGTAAGG
AAATAGATGATATAATTTACGAGGAAAAATTTAAATTTTTAGAATACTTGTATATGCCGGATCCAAGAGATACATTAATA
AACGATTGTCTGCATTTTCTTGAAAATAAATTGATGTATGCTGATATTGAGGAATTAGCCCTTGATGTAGCTAAATATTA
TTACACACAAGAAGAATATAAAAAAGCTTCTGTCTACTTTTTAAAGGTTGAAGAAGCCAGACAGCAGATCGAAGGAGGAG
TGAATTTATATGAAATTGAAGTATAA

Domains

Predicted by InterproScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

• Tetratricopeptide repeat (TPR_12) (188-254)

• Tetratricopeptide repeat (TPR_8) (265-293)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	70.079	100	0.701
rapC	Bacillus subtilis subsp. subtilis str. 168	54.211	99.738	0.541