Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   QC807_RS14350 Genome accession   NZ_CP122492
Coordinates   2947947..2948576 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain a15     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2942947..2953576
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QC807_RS14335 helD 2943189..2945243 (-) 2055 WP_000420533.1 DNA helicase IV -
  QC807_RS14340 yccF 2945366..2945812 (+) 447 WP_001261231.1 YccF domain-containing protein -
  QC807_RS14345 yccS 2945822..2947984 (+) 2163 WP_000875023.1 YccS family putative transporter -
  QC807_RS14350 sxy/tfoX 2947947..2948576 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  QC807_RS14355 sulA 2948795..2949304 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  QC807_RS14360 ompA 2949661..2950713 (+) 1053 WP_000750419.1 porin OmpA -
  QC807_RS14365 matP 2950789..2951241 (-) 453 WP_000877158.1 macrodomain Ter protein MatP -
  QC807_RS14370 ycbZ 2951427..2953187 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=740579 QC807_RS14350 WP_000839153.1 2947947..2948576(-) (sxy/tfoX) [Escherichia coli strain a15]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=740579 QC807_RS14350 WP_000839153.1 2947947..2948576(-) (sxy/tfoX) [Escherichia coli strain a15]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1