Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   OEG79_RS01990 Genome accession   NZ_CP107549
Coordinates   428000..429322 (+) Length   440 a.a.
NCBI ID   WP_264147220.1    Uniprot ID   -
Organism   Pseudomonas sp. Z8(2022)     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 423000..434322
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OEG79_RS01970 (OEG79_01970) - 423291..424274 (-) 984 WP_264147216.1 hydrolase -
  OEG79_RS01975 (OEG79_01975) rsmD 424413..425033 (-) 621 WP_264147217.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  OEG79_RS01980 (OEG79_01980) - 425033..426493 (-) 1461 WP_264147218.1 M16 family metallopeptidase -
  OEG79_RS01985 (OEG79_01985) - 426483..427856 (-) 1374 WP_264147219.1 M16 family metallopeptidase -
  OEG79_RS01990 (OEG79_01990) pilA 428000..429322 (+) 1323 WP_264147220.1 signal recognition particle-docking protein FtsY Machinery gene
  OEG79_RS01995 (OEG79_01995) ftsE 429319..429987 (+) 669 WP_013717545.1 cell division ATP-binding protein FtsE -
  OEG79_RS02000 (OEG79_02000) ftsX 429987..431003 (+) 1017 WP_264147221.1 permease-like cell division protein FtsX -
  OEG79_RS02005 (OEG79_02005) rpoH 431146..432000 (+) 855 WP_264147222.1 RNA polymerase sigma factor RpoH -
  OEG79_RS02010 (OEG79_02010) - 432064..432672 (+) 609 WP_264147223.1 hypothetical protein -
  OEG79_RS02015 (OEG79_02015) mtgA 432679..433407 (-) 729 WP_264147224.1 monofunctional biosynthetic peptidoglycan transglycosylase -
  OEG79_RS02020 (OEG79_02020) - 433627..433998 (+) 372 WP_264147225.1 DUF423 domain-containing protein -
  OEG79_RS02025 (OEG79_02025) thiS 434101..434301 (+) 201 WP_264147226.1 sulfur carrier protein ThiS -

Sequence

Protein


Download         Length: 440 a.a.        Molecular weight: 46001.54 Da        Isoelectric Point: 4.8663

>NTDB_id=740567 OEG79_RS01990 WP_264147220.1 428000..429322(+) (pilA) [Pseudomonas sp. Z8(2022)]
MFGSNDDKKSPAEAGAQTPPVTEEKKSLFSWWRKKPAETVAEPAQPAEQAAVPAPGEPSTPEPVPEAAPTVESQVADAMP
APAPQPAPPVAETPAAAPVPAEPPAVAEPVIEAAAVAAAPAPAAASATQDKPGFFARLKQGLSKTSASLGEGMASLFLGK
KAIDDDLLDDLETRLLTADVGVEATTTIIGNLTKRVARKELADSGALYKALQEELVGLLKPVEQPLVIDGAKQPYVILVV
GVNGVGKTTTIGKLAKKLQQDGKKVMLAAGDTFRAAAVEQLQVWGERNNIAVIAQHTGADSASVIFDAVQAAKSRGIDVL
IADTAGRLHTKDNLMEELKKVRRVIGKLDETAPHEVLLVLDAGTGQNAISQAKQFNQTVNLTGLALTKLDGTAKGGVIFA
LAKQFGLPIRYIGVGEGIDDLRPFEAQAFVQALFEERERG

Nucleotide


Download         Length: 1323 bp        

>NTDB_id=740567 OEG79_RS01990 WP_264147220.1 428000..429322(+) (pilA) [Pseudomonas sp. Z8(2022)]
ATGTTTGGTTCCAATGACGACAAGAAGTCGCCGGCCGAGGCTGGCGCGCAGACCCCGCCTGTGACCGAAGAAAAGAAATC
CCTGTTCAGCTGGTGGCGCAAGAAACCGGCAGAGACCGTTGCCGAGCCGGCACAGCCCGCCGAGCAGGCTGCTGTCCCGG
CACCTGGCGAGCCGTCGACGCCTGAGCCTGTCCCCGAAGCCGCGCCGACAGTCGAGTCGCAAGTGGCCGACGCCATGCCT
GCTCCGGCCCCGCAGCCTGCGCCGCCAGTCGCCGAAACCCCGGCTGCCGCACCTGTGCCGGCCGAGCCGCCAGCCGTAGC
CGAGCCCGTCATCGAGGCCGCTGCGGTAGCTGCTGCGCCAGCACCTGCCGCCGCATCGGCCACGCAGGACAAGCCCGGCT
TCTTCGCCCGCCTCAAGCAGGGCCTGTCGAAGACCAGCGCCAGCCTCGGTGAAGGCATGGCCAGCCTGTTCCTCGGCAAG
AAAGCCATCGACGACGACCTGCTCGACGATCTGGAAACCCGCCTGCTGACGGCCGACGTCGGCGTTGAAGCGACCACCAC
CATCATCGGCAACCTGACCAAGCGCGTGGCGCGCAAGGAACTGGCCGACAGCGGCGCGTTGTACAAGGCTCTGCAGGAAG
AGCTGGTCGGCCTGCTCAAGCCGGTCGAGCAGCCGCTGGTCATCGACGGCGCCAAGCAGCCCTACGTGATCCTCGTGGTC
GGCGTGAACGGCGTGGGCAAGACCACCACCATCGGCAAGCTGGCCAAGAAGCTGCAGCAAGACGGCAAGAAGGTCATGCT
CGCCGCCGGCGATACCTTCCGCGCCGCGGCCGTGGAACAGCTGCAGGTCTGGGGCGAGCGCAACAACATCGCGGTCATCG
CGCAGCACACCGGCGCCGATTCGGCCTCGGTGATCTTCGATGCGGTGCAGGCTGCCAAGTCCCGTGGCATCGATGTGCTG
ATCGCTGATACCGCCGGGCGCCTGCACACCAAGGACAACCTGATGGAAGAGCTGAAGAAGGTCCGTCGGGTGATCGGCAA
GCTGGACGAGACGGCTCCGCACGAAGTGTTGCTGGTGCTCGACGCCGGTACCGGCCAGAACGCCATCAGCCAGGCCAAGC
AGTTCAACCAGACGGTGAACCTCACCGGCCTGGCGCTGACCAAACTCGACGGCACCGCCAAGGGCGGTGTCATCTTCGCC
CTGGCCAAGCAGTTCGGCCTGCCGATTCGCTACATCGGCGTGGGCGAGGGCATCGATGACCTGCGTCCGTTCGAGGCGCA
GGCTTTCGTCCAGGCACTCTTCGAGGAGCGTGAGCGCGGATGA

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(235-434)

SRP54-type protein, helical bundle domain (SRP54_N)

(149-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

50.711

95.909

0.486