Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   OEG81_RS11835 Genome accession   NZ_CP107548
Coordinates   2494756..2496117 (-) Length   453 a.a.
NCBI ID   WP_264129450.1    Uniprot ID   -
Organism   Pollutimonas sp. M17     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2489756..2501117
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OEG81_RS11820 (OEG81_11820) - 2490747..2491463 (-) 717 WP_264129446.1 3-deoxy-D-manno-octulosonic acid kinase -
  OEG81_RS11825 (OEG81_11825) - 2491460..2493964 (-) 2505 WP_264129448.1 ABC transporter permease -
  OEG81_RS11830 (OEG81_11830) - 2493969..2494745 (-) 777 WP_264129449.1 sulfite exporter TauE/SafE family protein -
  OEG81_RS11835 (OEG81_11835) radA 2494756..2496117 (-) 1362 WP_264129450.1 DNA repair protein RadA Machinery gene
  OEG81_RS11840 (OEG81_11840) - 2496146..2496862 (-) 717 WP_264129452.1 SDR family oxidoreductase -
  OEG81_RS11845 (OEG81_11845) alr 2496933..2498072 (-) 1140 WP_264129453.1 alanine racemase -
  OEG81_RS11850 (OEG81_11850) hpnC 2498148..2499029 (+) 882 WP_264129454.1 squalene synthase HpnC -
  OEG81_RS11855 (OEG81_11855) hpnD 2499080..2499955 (+) 876 WP_264129455.1 presqualene diphosphate synthase HpnD -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 47925.45 Da        Isoelectric Point: 7.7007

>NTDB_id=740563 OEG81_RS11835 WP_264129450.1 2494756..2496117(-) (radA) [Pollutimonas sp. M17]
MAKAKTLFTCSDCGGSCPKWEGKCPHCGAWNTLQETRDAAAAAHRYAPLAGASPVRSLAEIEARELPRQPTGISEFDRVL
GGGLVAGAVVLIGGDPGIGKSTLLLQALVSLSKAVKVLYVTGEESAEQVALRARRLELVTGEVDLLAEIRLESIMAALAE
QKPSVAVIDSIQTLYSGELSAAPGSVSQVRECAAQLTRLAKQTGITIVLIGHVTKDGSLAGPRVLEHIVDTVLYFEGDTH
SSFRLVRAFKNRFGAVNELGVFAMTDRGLRGVTNPSALFLSQHEQNVPGSCVMATQEGTRPLLVEIQALVDTAHVPNPRR
LSVGLEGTRLAMLLAVLHRHAGVVTFDQDVFVNAVGGVKITEPAADLAVLLAIMSSLGNKPLPKGLVVFGEVGLAGEIRP
APRGQERLREAAKLGFSLALIPKANAPKQPIEGLEIWAVDRVDAAMARLRAHA

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=740563 OEG81_RS11835 WP_264129450.1 2494756..2496117(-) (radA) [Pollutimonas sp. M17]
ATGGCCAAAGCAAAAACCTTATTTACCTGTAGCGACTGCGGCGGAAGCTGCCCCAAGTGGGAAGGCAAATGCCCGCATTG
CGGCGCCTGGAACACTCTGCAGGAAACCCGCGACGCCGCTGCGGCCGCGCATCGCTACGCGCCGCTGGCCGGCGCCAGCC
CGGTGCGCAGCCTGGCCGAGATCGAGGCGCGCGAACTGCCGCGCCAGCCCACCGGCATTTCCGAGTTCGACCGCGTCCTG
GGCGGCGGCCTGGTGGCGGGCGCCGTCGTGCTGATCGGGGGCGATCCCGGCATCGGCAAGTCCACCCTGCTGTTGCAGGC
CCTGGTTTCCCTGTCCAAGGCGGTCAAGGTGCTGTACGTGACGGGGGAAGAGTCGGCCGAGCAGGTTGCGCTGCGGGCCC
GGCGCCTGGAACTGGTCACCGGCGAAGTCGACCTGCTGGCCGAAATCCGCCTGGAGTCCATCATGGCGGCCCTGGCCGAA
CAGAAGCCCAGCGTCGCCGTCATCGACTCCATCCAGACGCTGTATTCGGGCGAACTCAGCGCCGCGCCGGGCTCCGTATC
CCAGGTGCGCGAGTGCGCCGCCCAATTGACGCGGCTGGCCAAGCAGACCGGCATCACCATCGTCCTGATCGGGCACGTCA
CCAAGGACGGCAGCCTGGCGGGCCCCCGCGTGCTGGAACACATCGTCGACACGGTGCTGTACTTCGAGGGCGATACGCAT
TCCTCCTTCCGCCTGGTGCGGGCCTTCAAGAACCGCTTCGGGGCGGTCAATGAACTGGGTGTCTTCGCCATGACCGACCG
AGGCCTGCGCGGCGTCACGAATCCCTCGGCCTTGTTCCTGTCCCAGCACGAGCAGAACGTGCCAGGCTCCTGCGTCATGG
CCACTCAAGAGGGCACGCGTCCCTTGCTGGTCGAGATCCAGGCCCTGGTCGATACGGCCCATGTCCCCAATCCGCGACGG
CTCTCGGTAGGACTGGAAGGCACCCGCCTGGCCATGCTGCTGGCGGTGCTGCACCGGCACGCCGGCGTCGTGACCTTCGA
TCAGGATGTCTTCGTCAATGCCGTGGGCGGCGTCAAGATCACCGAACCGGCGGCCGACCTGGCGGTGCTGCTGGCCATCA
TGTCCTCGCTGGGCAACAAGCCGCTGCCCAAGGGCTTGGTCGTATTCGGCGAAGTCGGGCTTGCCGGCGAAATACGGCCC
GCTCCGCGCGGCCAGGAACGCTTGCGCGAGGCGGCCAAGCTGGGGTTCAGCCTGGCGCTGATTCCGAAGGCGAATGCGCC
CAAGCAGCCCATCGAAGGGCTGGAAATATGGGCGGTCGACCGCGTGGACGCCGCCATGGCCCGCTTGCGCGCCCATGCTT
GA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(78-217)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.237

100

0.499
  radA Streptococcus mitis SK321

49.176

93.819

0.461
  radA Streptococcus pneumoniae Rx1

49.176

93.819

0.461
  radA Streptococcus pneumoniae D39

49.176

93.819

0.461
  radA Streptococcus pneumoniae R6

49.176

93.819

0.461
  radA Streptococcus pneumoniae TIGR4

49.176

93.819

0.461
  radA Streptococcus mitis NCTC 12261

48.941

93.819

0.459