Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   OEG81_RS03345 Genome accession   NZ_CP107548
Coordinates   692879..694174 (+) Length   431 a.a.
NCBI ID   WP_264131319.1    Uniprot ID   -
Organism   Pollutimonas sp. M17     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 687879..699174
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OEG81_RS03320 (OEG81_03320) - 688245..690854 (+) 2610 WP_264131314.1 AsmA family protein -
  OEG81_RS03325 (OEG81_03325) - 690851..691240 (+) 390 WP_264131315.1 MOSC domain-containing protein -
  OEG81_RS03330 (OEG81_03330) - 691280..691534 (-) 255 WP_264131316.1 YfhL family 4Fe-4S dicluster ferredoxin -
  OEG81_RS03335 (OEG81_03335) coaD 691631..692143 (-) 513 WP_264131317.1 pantetheine-phosphate adenylyltransferase -
  OEG81_RS03340 (OEG81_03340) - 692232..692822 (-) 591 WP_264131318.1 RsmD family RNA methyltransferase -
  OEG81_RS03345 (OEG81_03345) pilA 692879..694174 (+) 1296 WP_264131319.1 signal recognition particle-docking protein FtsY Machinery gene
  OEG81_RS03350 (OEG81_03350) - 694171..695754 (-) 1584 WP_264131320.1 CYTH and CHAD domain-containing protein -
  OEG81_RS03355 (OEG81_03355) - 695822..696640 (-) 819 WP_264131321.1 IclR family transcriptional regulator -
  OEG81_RS03360 (OEG81_03360) ribBA 696821..697990 (+) 1170 WP_264131322.1 bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II -
  OEG81_RS03365 (OEG81_03365) ribH 698006..698539 (+) 534 WP_264131323.1 6,7-dimethyl-8-ribityllumazine synthase -
  OEG81_RS03370 (OEG81_03370) nusB 698517..699026 (+) 510 WP_264131324.1 transcription antitermination factor NusB -

Sequence

Protein


Download         Length: 431 a.a.        Molecular weight: 44142.19 Da        Isoelectric Point: 4.7583

>NTDB_id=740555 OEG81_RS03345 WP_264131319.1 692879..694174(+) (pilA) [Pollutimonas sp. M17]
MFSIFKRKKPGPAEGAGQGPAQGADAGLDAPRDTSPDAIPPPADEAASAEAAPLSSDAAGNEPAGRDPEPESTAVPSAVP
VSETSVPAPVVPTPEPAQAAELRPEPEAEPPAPESPPTVMPALAPAAGKSSWLTRLKKGLSRTGQSIGGLFVGVKVDEDL
FEELETALIMADAGVEATQKLLTALRAHVRKERLDDAAAVKAALCDILTDHLAPLEKAFPLGQAQPLVVMIAGVNGAGKT
TSIGKLANHFQARGAKVLLAAGDTFRAAAREQLMEWGARNNVTVIAQDGGDPAAVAFDAVNAGRARDAGVVMIDTAGRLP
TQLHLMEELRKIKRVIGKADGAAPHEVLLVIDGNTGQNAIAQIRAFDAAITLTGLVVTKLDGTAKGGTLAAVAAGSQGVR
PVPVYWIGVGEGLNDLQPFVAREFASALLGD

Nucleotide


Download         Length: 1296 bp        

>NTDB_id=740555 OEG81_RS03345 WP_264131319.1 692879..694174(+) (pilA) [Pollutimonas sp. M17]
ATGTTCAGTATTTTTAAAAGAAAGAAGCCGGGTCCCGCTGAAGGCGCTGGGCAGGGGCCGGCACAGGGCGCGGATGCCGG
GCTGGACGCGCCGCGGGACACCTCGCCGGACGCGATCCCGCCACCGGCGGACGAAGCCGCGTCGGCCGAGGCTGCGCCAC
TCTCGTCCGATGCCGCCGGAAACGAGCCGGCTGGCCGCGATCCCGAGCCCGAGTCGACTGCGGTGCCCAGCGCCGTTCCC
GTCTCCGAGACCTCCGTCCCCGCTCCCGTCGTGCCGACGCCAGAGCCGGCTCAGGCCGCCGAACTTCGGCCCGAGCCGGA
AGCCGAACCCCCGGCGCCTGAATCGCCGCCGACCGTCATGCCGGCGCTCGCGCCAGCCGCCGGGAAGTCATCCTGGCTGA
CACGCTTGAAGAAAGGCCTGTCGCGCACGGGGCAGAGCATCGGCGGCCTTTTCGTCGGCGTCAAGGTCGATGAAGACCTT
TTCGAGGAGCTTGAAACGGCCCTCATCATGGCGGACGCGGGCGTGGAAGCCACCCAGAAGCTGTTGACGGCCTTGCGCGC
CCATGTGCGAAAAGAACGTCTGGACGATGCCGCGGCGGTCAAGGCGGCGCTGTGCGACATATTGACCGATCACCTGGCGC
CGCTGGAGAAGGCCTTTCCCCTGGGGCAGGCCCAGCCTTTGGTCGTGATGATCGCGGGCGTGAACGGGGCGGGCAAGACG
ACATCCATCGGCAAGCTGGCCAATCATTTTCAGGCCCGGGGCGCCAAGGTCCTGCTGGCGGCGGGCGATACCTTCCGGGC
GGCGGCCCGCGAGCAGTTGATGGAATGGGGCGCGCGCAACAACGTGACCGTCATTGCGCAGGACGGCGGCGATCCCGCGG
CGGTCGCCTTCGACGCGGTGAACGCGGGCAGGGCGCGCGATGCCGGCGTCGTCATGATAGACACCGCCGGCCGCCTGCCG
ACGCAATTGCACCTGATGGAAGAGCTCAGGAAGATCAAGCGGGTCATCGGCAAGGCCGATGGCGCGGCGCCCCACGAAGT
ACTGCTGGTCATCGACGGCAACACGGGGCAGAACGCCATTGCCCAGATACGGGCCTTCGACGCCGCCATCACCCTGACCG
GCCTGGTCGTGACCAAGCTGGACGGCACGGCCAAGGGCGGAACCCTGGCCGCGGTCGCCGCGGGCAGCCAGGGCGTGCGG
CCGGTGCCGGTGTATTGGATAGGGGTGGGCGAAGGCCTGAACGACCTGCAGCCCTTCGTGGCCCGCGAGTTCGCGTCGGC
CCTGCTGGGCGATTAG

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(227-430)

SRP54-type protein, helical bundle domain (SRP54_N)

(145-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

47.717

100

0.485