Detailed information NTG0740553

Bioinformatically predicted

Overview

• Name: rpoN/rpoN1
• Type: Machinery gene
• Locus tag: OEG81_RS00455
• Genome accession: NZ_CP107548
• Coordinates: 107576..108979 (+)
• Length: 467 a.a.
• NCBI ID: WP_264130721.1
• Uniprot ID: -
• Organism: Pollutimonas sp. M17
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 102576..113979

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OEG81_RS00440 (OEG81_00440)	-	102848..103885 (-)	1038	WP_264130718.1	LacI family DNA-binding transcriptional regulator	-
OEG81_RS00445 (OEG81_00445)	leuA	104993..106684 (-)	1692	WP_264130719.1	2-isopropylmalate synthase	-
OEG81_RS00450 (OEG81_00450)	-	107001..107561 (-)	561	WP_264130720.1	hypothetical protein	-
OEG81_RS00455 (OEG81_00455)	rpoN/rpoN1	107576..108979 (+)	1404	WP_264130721.1	RNA polymerase factor sigma-54	Machinery gene
OEG81_RS00460 (OEG81_00460)	-	109092..109367 (+)	276	WP_264130722.1	(2Fe-2S)-binding protein	-
OEG81_RS00465 (OEG81_00465)	bfr	109723..110199 (+)	477	WP_264130723.1	bacterioferritin	-
OEG81_RS00470 (OEG81_00470)	-	110354..111004 (-)	651	WP_264130724.1	hypothetical protein	-
OEG81_RS00475 (OEG81_00475)	-	111083..112690 (-)	1608	WP_264130725.1	peptide chain release factor 3	-
OEG81_RS00480 (OEG81_00480)	-	112750..113379 (-)	630	WP_264130726.1	LysE family transporter	-

Sequence

Protein

• Length: 467 a.a.
• Molecular weight: 51090.13 Da
• Isoelectric Point: 4.9968

>NTDB_id=740553 OEG81_RS00455 WP_264130721.1 107576..108979(+) (rpoN/rpoN1) [Pollutimonas sp. M17]
MQSRQSLELRQHQQLALTPQLQQSIRFLQLSSHELELEVAQALLENPLLEREEEYDTDTPDTVADEAQAQEDRWATPGMS
GRNGGGADDEPTRPETALAETLQDHLLEQLRLTRAEARDCALITLLIQELDENGYLPTSLDDVLACLPEELAVEPEELHA
ALRLLQSFDPPGVGARSLGECLCLQLDYLEAASRTLEPEVLACARAIARHHLGLLATGNLIRLRDALSCDQAVLRAAHAV
LLQLEPKPARDWAASTADYITPDVLVNKVGKRWVARVNPATMPRLRINAVYEDLLGKGPAAPAMQSQLQQAHGLIKSVSQ
RFVTVLRVAQAIVDRQQGYFENGAAGMRPLVLRDIAQELELHESTVSRATKQKYAQTPWGVIELKGFFGAALQTDGGEST
SAAAVRSLILKLVAAESGAKPLSDNQIALRLADQGVVIARRTVAKYREAAGIEPAILRKARAALESR

Nucleotide

• Length: 1404 bp

>NTDB_id=740553 OEG81_RS00455 WP_264130721.1 107576..108979(+) (rpoN/rpoN1) [Pollutimonas sp. M17]
ATGCAATCGCGTCAATCCTTGGAACTTCGCCAGCACCAGCAATTGGCGCTGACCCCTCAGCTGCAGCAATCGATACGATT
CCTGCAGCTGTCGTCGCACGAACTGGAATTGGAGGTGGCGCAGGCCTTGCTGGAAAATCCCTTGCTCGAGCGCGAGGAAG
AGTATGACACCGATACGCCGGATACGGTAGCCGACGAAGCGCAGGCTCAGGAAGATCGCTGGGCGACGCCGGGCATGTCC
GGCCGCAATGGCGGCGGCGCGGATGACGAGCCCACACGGCCCGAGACGGCCCTGGCGGAGACCCTGCAGGACCATCTTCT
GGAGCAGTTGCGCCTGACGCGCGCCGAGGCGCGCGACTGTGCCCTGATCACGCTCCTGATCCAGGAGCTGGACGAGAACG
GCTATTTGCCGACATCGCTGGATGACGTGCTTGCCTGCCTGCCGGAGGAACTCGCGGTCGAACCCGAAGAATTGCATGCC
GCCTTGCGCCTGCTGCAGTCGTTCGATCCGCCCGGTGTGGGCGCGCGATCCCTTGGCGAATGCCTGTGCCTGCAGTTGGA
CTACCTCGAGGCGGCATCGAGAACGTTGGAGCCCGAGGTGCTGGCTTGCGCCCGCGCCATCGCCCGCCACCATCTGGGCC
TGCTGGCCACGGGCAATCTGATCAGGCTGCGCGATGCGCTGTCCTGTGACCAGGCCGTATTGCGCGCCGCGCACGCGGTC
TTGCTGCAATTGGAGCCCAAGCCGGCGCGCGATTGGGCCGCTTCGACGGCCGACTACATCACCCCGGACGTGCTGGTCAA
CAAAGTGGGCAAGCGTTGGGTGGCCAGGGTCAATCCGGCCACCATGCCGCGGTTGCGCATCAATGCGGTGTATGAGGACC
TGCTGGGCAAGGGACCGGCGGCGCCGGCCATGCAGAGCCAGCTTCAGCAGGCGCACGGCCTGATCAAAAGCGTGAGCCAG
CGTTTCGTGACGGTCTTGCGCGTGGCCCAGGCGATCGTGGACAGGCAGCAGGGCTACTTCGAAAACGGAGCCGCGGGCAT
GCGCCCATTGGTGCTGCGGGATATCGCCCAGGAGCTGGAGCTGCACGAGTCCACGGTATCGCGGGCGACCAAGCAGAAGT
ATGCCCAGACTCCTTGGGGCGTCATCGAGCTGAAAGGGTTCTTCGGAGCAGCCTTGCAAACTGACGGCGGAGAGTCGACA
TCGGCCGCCGCCGTGCGTTCGCTGATCCTGAAGCTGGTCGCCGCGGAGTCGGGCGCCAAGCCGCTGTCGGACAATCAGAT
TGCGCTTCGCCTGGCCGATCAGGGTGTGGTGATAGCGCGGCGCACCGTGGCCAAGTATCGCGAGGCGGCCGGCATAGAGC
CGGCCATCCTGCGCAAGGCGCGTGCGGCCCTGGAGAGCCGCTGA

Domains

Predicted by InterproScan.

• Sigma-54 factor, core binding domain (Sigma54_CBD) (97-291)

• Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID) (6-50)

• Sigma-54, DNA binding domain (Sigma54_DBD) (304-459)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoN/rpoN1	Ralstonia pseudosolanacearum GMI1000	45.866	100	0.499