Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   QAO16_RS06965 Genome accession   NZ_CP122489
Coordinates   1365071..1366042 (-) Length   323 a.a.
NCBI ID   WP_000876311.1    Uniprot ID   -
Organism   Staphylococcus aureus strain GE-MSSA42     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1360071..1371042
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAO16_RS06940 (QAO16_06925) murB 1360655..1361578 (+) 924 WP_000608444.1 UDP-N-acetylmuramate dehydrogenase -
  QAO16_RS06945 (QAO16_06930) - 1361596..1361910 (+) 315 WP_001127269.1 CHY zinc finger protein -
  QAO16_RS06950 (QAO16_06935) - 1362227..1363255 (-) 1029 WP_000754458.1 ferrated catecholamine ABC transporter substrate-binding lipoprotein SstD -
  QAO16_RS06955 (QAO16_06940) - 1363370..1364131 (-) 762 WP_000616865.1 ABC transporter ATP-binding protein -
  QAO16_RS06960 (QAO16_06945) - 1364128..1365084 (-) 957 WP_001245566.1 iron chelate uptake ABC transporter family permease subunit -
  QAO16_RS06965 (QAO16_06950) ceuB 1365071..1366042 (-) 972 WP_000876311.1 ABC transporter permease Machinery gene
  QAO16_RS06970 (QAO16_06955) nrdF 1366419..1367390 (-) 972 WP_000562498.1 class 1b ribonucleoside-diphosphate reductase subunit beta -
  QAO16_RS06975 (QAO16_06960) nrdE 1367510..1369615 (-) 2106 WP_000855505.1 class 1b ribonucleoside-diphosphate reductase subunit alpha -
  QAO16_RS06980 (QAO16_06965) nrdI 1369578..1369976 (-) 399 WP_000692521.1 class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI -

Sequence

Protein


Download         Length: 323 a.a.        Molecular weight: 35558.04 Da        Isoelectric Point: 10.1963

>NTDB_id=740327 QAO16_RS06965 WP_000876311.1 1365071..1366042(-) (ceuB) [Staphylococcus aureus strain GE-MSSA42]
MKYLLKGKILLLLLILLTIISLFIGVSELSIKDIFHLSDSQQNILFSSRIPRTMSILIAGSSLALAGLIMQQMMQNKFVS
PTTAGTMEWAKLGILIALLFFPTGHILLKLVFAVICSISGTFLFVKIIDFIKVKDVIFVPLLGIMMGGIVASFTTFISLR
TNAVQSIGNWLNGNFAIITSGRYEILYLSIPLLALTYLFANHFTIVGMGKDFTNNLGLSYEKLINIALFITATITALVVV
TVGTLPFLGLVIPNIISIYRGDHLKNAIPHTMMLGAIFVLFSDIVGRIVVYPYEINIGLTIGVFGTIIFLILLMKGRKNY
AQQ

Nucleotide


Download         Length: 972 bp        

>NTDB_id=740327 QAO16_RS06965 WP_000876311.1 1365071..1366042(-) (ceuB) [Staphylococcus aureus strain GE-MSSA42]
ATGAAGTATTTATTAAAGGGAAAAATTTTGCTTCTATTACTTATATTGCTAACAATTATTTCGTTGTTTATAGGTGTCAG
TGAACTGTCTATTAAAGATATCTTTCATTTGTCAGACTCACAGCAAAATATATTGTTCTCAAGCCGAATACCGAGAACGA
TGAGTATTTTAATTGCTGGAAGTTCATTAGCTTTAGCTGGCCTAATCATGCAACAAATGATGCAAAATAAGTTTGTTAGT
CCAACTACAGCTGGGACGATGGAGTGGGCAAAATTAGGAATCTTAATTGCCCTATTATTCTTTCCAACTGGTCATATTTT
ATTAAAACTAGTATTTGCTGTTATTTGCAGCATCAGCGGAACATTTTTATTTGTTAAAATTATTGATTTTATCAAAGTGA
AAGATGTCATCTTTGTACCACTATTAGGGATTATGATGGGTGGCATTGTCGCTAGTTTTACAACGTTTATCTCATTACGT
ACAAACGCAGTTCAAAGCATTGGTAACTGGCTTAACGGGAACTTTGCCATTATCACAAGTGGACGTTATGAAATCTTGTA
TTTAAGTATTCCTCTTTTAGCATTGACATATCTTTTTGCAAATCATTTCACAATTGTAGGTATGGGTAAAGACTTTACCA
ATAATTTAGGTTTGAGTTATGAAAAATTAATCAATATTGCTCTATTTATTACTGCCACAATTACGGCATTAGTCGTTGTG
ACAGTTGGAACTTTACCCTTCTTAGGTTTAGTTATTCCAAATATTATTTCGATTTATAGAGGCGATCATTTAAAAAATGC
AATTCCTCATACGATGATGTTAGGTGCCATCTTTGTATTGTTTTCTGATATAGTTGGCAGAATTGTAGTTTATCCATATG
AAATTAATATTGGTTTAACAATAGGTGTATTTGGAACAATCATTTTCCTTATCTTACTTATGAAAGGTAGGAAAAATTAT
GCGCAACAATAA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(13-315)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

47.812

99.071

0.474