Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   RxyAA322_RS07320 Genome accession   NZ_AP019791
Coordinates   1414092..1415480 (-) Length   462 a.a.
NCBI ID   WP_143527601.1    Uniprot ID   A0A510HHX8
Organism   Rubrobacter xylanophilus strain AA3-22     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1409092..1420480
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RxyAA322_RS07295 (RxyAA322_14550) cysS 1409113..1410525 (-) 1413 WP_143527592.1 cysteine--tRNA ligase -
  RxyAA322_RS07300 (RxyAA322_14560) - 1410522..1411814 (-) 1293 WP_143527594.1 glutamate--tRNA ligase family protein -
  RxyAA322_RS07305 (RxyAA322_14570) ispF 1411807..1412304 (-) 498 WP_143527596.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  RxyAA322_RS07310 (RxyAA322_14580) ispD 1412312..1413007 (-) 696 WP_143527598.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  RxyAA322_RS07315 (RxyAA322_14590) disA 1413010..1414095 (-) 1086 WP_143527600.1 DNA integrity scanning diadenylate cyclase DisA -
  RxyAA322_RS07320 (RxyAA322_14600) radA 1414092..1415480 (-) 1389 WP_143527601.1 DNA repair protein RadA Machinery gene
  RxyAA322_RS07325 (RxyAA322_14610) - 1415730..1418231 (-) 2502 WP_143527602.1 ATP-dependent Clp protease ATP-binding subunit -
  RxyAA322_RS07330 (RxyAA322_14620) lysS 1418622..1420100 (-) 1479 WP_143527603.1 lysine--tRNA ligase -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 48558.77 Da        Isoelectric Point: 5.4430

>NTDB_id=74028 RxyAA322_RS07320 WP_143527601.1 1414092..1415480(-) (radA) [Rubrobacter xylanophilus strain AA3-22]
MAAKTVYVCSNCGHEEPKWLGRCPDCGAWSTFVEEVRGERKAAGFAARARGGGSRASAGKTLRLDEVGGEAEGRMGTGIG
ELDRILGGGLVPGSLVLVGGEPGVGKSTLLLQVMGHLGDRCLMVSGEESPRQVAMSARRLGVAGSGFGVLAETDVDVIGA
TILRERPEVVVVDSIQTLYSPELAGAPGGVGQVRECAARLMRLAKAEGIAVVLVGHVTKEGAIAGPRVLEHMVDTVLQFE
GDRFQAFRILRALKNRFGSTNEVGVFEMTSRGMEEVEDPSAFFLSRREAEVPPGVATVCLLEGTRPMLVEIESLVAPSPL
AVPRRVARGVDGGRINMLCAVLSRRAGLALGSQDVYVNVTGGVRVEEPAADLGAALAIASALRDRPLERGTACFGEVGLT
GDVRFVPGTERRLRELIKLGFDRIIMPEGSSGGPTDDGAESRRGVNVVEVRTLEEAVAVALL

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=74028 RxyAA322_RS07320 WP_143527601.1 1414092..1415480(-) (radA) [Rubrobacter xylanophilus strain AA3-22]
GTGGCTGCGAAGACCGTATACGTGTGCTCCAACTGCGGGCACGAAGAACCCAAGTGGCTCGGGCGCTGCCCGGACTGCGG
GGCGTGGAGCACCTTCGTCGAGGAGGTGCGCGGCGAGAGGAAGGCTGCGGGTTTCGCGGCCCGGGCCCGGGGGGGCGGCT
CCCGGGCCTCCGCCGGGAAGACCCTCAGGCTGGACGAGGTCGGCGGGGAGGCCGAGGGGCGGATGGGCACCGGGATCGGA
GAGCTCGACCGCATCCTGGGCGGCGGGCTCGTACCGGGCTCGCTCGTGCTGGTGGGCGGAGAGCCCGGGGTGGGCAAGAG
CACGCTGCTCCTGCAGGTCATGGGGCACCTCGGGGACCGGTGTCTGATGGTGAGCGGTGAGGAATCGCCGCGGCAGGTCG
CCATGAGCGCCCGCCGGCTCGGGGTCGCGGGCTCCGGCTTCGGGGTGCTCGCGGAGACCGACGTGGACGTCATAGGGGCC
ACCATCCTGCGCGAGCGGCCTGAGGTGGTGGTCGTGGACTCCATCCAGACGCTCTACTCGCCGGAGCTCGCCGGGGCTCC
AGGGGGTGTGGGGCAGGTGCGGGAGTGTGCCGCTCGCCTGATGCGGCTGGCGAAGGCCGAGGGGATAGCCGTCGTGCTCG
TCGGCCACGTCACCAAGGAGGGGGCCATCGCCGGGCCGCGGGTGCTCGAGCACATGGTGGACACCGTGCTCCAGTTCGAG
GGGGACAGGTTCCAGGCCTTCCGCATCCTGCGGGCGCTCAAGAACCGCTTTGGCTCGACCAACGAGGTGGGGGTCTTCGA
GATGACCTCCCGCGGGATGGAGGAGGTGGAGGATCCTTCGGCGTTCTTCCTCTCCCGCCGCGAGGCCGAGGTGCCGCCGG
GCGTGGCCACCGTGTGTCTGCTGGAGGGGACGCGCCCGATGCTCGTGGAGATAGAGAGCCTGGTGGCTCCGAGCCCGCTG
GCCGTCCCGCGCCGGGTGGCCCGAGGGGTCGACGGCGGGCGGATCAACATGCTGTGCGCGGTGCTCTCGCGCCGGGCCGG
GCTCGCGCTCGGCTCCCAGGACGTCTACGTCAACGTGACCGGCGGGGTGCGGGTCGAGGAGCCGGCGGCCGATCTCGGGG
CCGCGCTCGCCATAGCCTCCGCACTGAGGGACAGGCCGCTGGAGCGCGGCACCGCCTGCTTCGGGGAGGTCGGCCTCACG
GGGGACGTGCGGTTCGTGCCCGGGACGGAGCGCAGGCTGCGCGAACTGATCAAGCTCGGCTTCGATCGTATAATAATGCC
GGAAGGTTCCTCCGGTGGCCCGACGGACGATGGGGCCGAGTCCAGAAGAGGGGTCAACGTGGTAGAGGTGAGGACGCTCG
AAGAGGCCGTGGCGGTGGCGTTGCTGTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(7-34)

Subunit ChlI of Mg-chelatase (ChlI)

(346-428)

KaiC (ATPase)

(76-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A510HHX8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.918

100

0.489
  radA Streptococcus pneumoniae Rx1

48.246

98.701

0.476
  radA Streptococcus pneumoniae D39

48.246

98.701

0.476
  radA Streptococcus pneumoniae TIGR4

48.246

98.701

0.476
  radA Streptococcus pneumoniae R6

48.246

98.701

0.476
  radA Streptococcus mitis NCTC 12261

48.026

98.701

0.474
  radA Streptococcus mitis SK321

49.77

93.939

0.468

Multiple sequence alignment