Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   QAY60_RS09475 Genome accession   NZ_CP122488
Coordinates   1959607..1960347 (-) Length   246 a.a.
NCBI ID   WP_000216874.1    Uniprot ID   -
Organism   Staphylococcus aureus strain IT-MRSA44     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1954607..1965347
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAY60_RS09450 (QAY60_09405) hemH 1955484..1956407 (-) 924 WP_000162881.1 ferrochelatase -
  QAY60_RS09455 (QAY60_09410) hemE 1956465..1957502 (-) 1038 WP_061734911.1 uroporphyrinogen decarboxylase -
  QAY60_RS09460 (QAY60_09415) - 1957492..1957578 (-) 87 WP_031875110.1 hypothetical protein -
  QAY60_RS09465 (QAY60_09420) traP 1957764..1958267 (+) 504 WP_000737984.1 signal transduction protein TRAP -
  QAY60_RS09470 (QAY60_09425) ecsB 1958391..1959614 (-) 1224 WP_001245754.1 ABC transporter permease EcsB -
  QAY60_RS09475 (QAY60_09430) pptA 1959607..1960347 (-) 741 WP_000216874.1 ABC transporter ATP-binding protein EcsA Regulator
  QAY60_RS09480 (QAY60_09435) - 1960481..1960903 (+) 423 WP_000004981.1 HIT family protein -
  QAY60_RS09485 (QAY60_09440) - 1961045..1961410 (+) 366 WP_000648118.1 YtxH domain-containing protein -
  QAY60_RS09490 (QAY60_09445) - 1962143..1962700 (+) 558 WP_000477959.1 DUF3267 domain-containing protein -
  QAY60_RS09495 (QAY60_09450) - 1962905..1963867 (+) 963 WP_000782119.1 foldase protein PrsA -
  QAY60_RS09500 (QAY60_09455) yhaM 1963988..1964929 (-) 942 WP_001244175.1 3'-5' exoribonuclease YhaM -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27687.02 Da        Isoelectric Point: 4.6672

>NTDB_id=740248 QAY60_RS09475 WP_000216874.1 1959607..1960347(-) (pptA) [Staphylococcus aureus strain IT-MRSA44]
MTVKVEQLTGGYGKRPVIKDINFELNKGEIVGLIGLNGAGKSTTIKHMLGLLTPMEGSLSISDININDDIEAYRRKLSYI
PESPVIYEELTLEEHIEMTAMAYDIDRDEAMNRAMPLLKTFRLENELKVFPSHFSKGMKQKVMIICAFIVNPELYIIDEP
FLGLDPLGIQSMLDLMVEKKNEGRTVLMSTHILATAERYCDRFIILDEGEVVAFGDLEALRQQTGLHNQTLDDIYIHVTQ
GGDVHA

Nucleotide


Download         Length: 741 bp        

>NTDB_id=740248 QAY60_RS09475 WP_000216874.1 1959607..1960347(-) (pptA) [Staphylococcus aureus strain IT-MRSA44]
ATGACAGTTAAAGTAGAACAGCTTACAGGTGGATATGGAAAACGCCCTGTAATTAAAGATATAAATTTTGAATTAAACAA
AGGCGAAATTGTTGGACTTATTGGCCTTAATGGCGCTGGTAAGAGTACAACGATTAAACATATGCTAGGATTGCTTACAC
CTATGGAAGGATCTCTATCAATTTCAGATATCAACATTAATGATGACATAGAGGCTTATAGAAGAAAGTTATCTTATATT
CCGGAATCACCGGTTATTTATGAAGAACTCACATTAGAGGAACACATTGAGATGACAGCAATGGCATATGATATTGATCG
TGATGAAGCGATGAATCGAGCAATGCCATTATTAAAGACATTCCGTTTAGAAAATGAATTGAAAGTTTTTCCGAGTCATT
TTTCTAAGGGGATGAAACAAAAAGTCATGATTATTTGTGCGTTTATCGTTAATCCCGAATTGTATATTATAGACGAACCA
TTCCTTGGCCTAGATCCATTAGGAATTCAATCCATGTTAGATTTAATGGTTGAAAAGAAAAACGAAGGTAGAACCGTTCT
AATGAGTACACATATTTTAGCAACAGCTGAACGTTACTGTGATCGTTTTATCATACTAGACGAAGGTGAAGTCGTTGCAT
TTGGAGATTTAGAAGCATTGAGACAACAAACTGGCTTACATAATCAAACATTAGACGATATATATATTCATGTGACGCAA
GGTGGAGATGTACATGCGTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(19-161)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

57.322

97.154

0.557
  pptA Streptococcus thermophilus LMD-9

56.067

97.154

0.545