Detailed information NTG0740248

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: OH502_RS22415
• Genome accession: NZ_CP107483
• Coordinates: 4504130..4504930 (+)
• Length: 266 a.a.
• NCBI ID: WP_002888947.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain CRKP_8
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4499130..4509930

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OH502_RS22380	gspH	4499286..4499801 (+)	516	WP_004151939.1	type II secretion system minor pseudopilin GspH	-
OH502_RS22385	gspI	4499798..4500163 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
OH502_RS22390	gspJ	4500160..4500756 (+)	597	WP_004151940.1	type II secretion system minor pseudopilin GspJ	-
OH502_RS22395	gspK	4500753..4501739 (+)	987	WP_004151941.1	type II secretion system minor pseudopilin GspK	-
OH502_RS22400	gspL	4501726..4502919 (+)	1194	WP_004151942.1	type II secretion system protein GspL	-
OH502_RS22405	-	4502912..4503397 (+)	486	WP_004151943.1	type II secretion system protein M	-
OH502_RS22410	-	4503387..4504133 (+)	747	WP_004145897.1	type II secretion system protein N	-
OH502_RS22415	pilD	4504130..4504930 (+)	801	WP_002888947.1	prepilin peptidase	Machinery gene
OH502_RS22420	hrpB	4504978..4507407 (-)	2430	WP_004151944.1	ATP-dependent helicase HrpB	-
OH502_RS22425	thpR	4507480..4508016 (+)	537	WP_004145901.1	RNA 2',3'-cyclic phosphodiesterase	-
OH502_RS22430	sfsA	4508016..4508732 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
OH502_RS22435	dksA	4508895..4509350 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29419.04 Da
• Isoelectric Point: 8.8894

>NTDB_id=740248 OH502_RS22415 WP_002888947.1 4504130..4504930(+) (pilD) [Klebsiella pneumoniae strain CRKP_8]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGSIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=740248 OH502_RS22415 WP_002888947.1 4504130..4504930(+) (pilD) [Klebsiella pneumoniae strain CRKP_8]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTAGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGA
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTGCTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGAGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425