Detailed information NTG0740090

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: OH499_RS08910
• Genome accession: NZ_CP107452
• Coordinates: 1780647..1781447 (+)
• Length: 266 a.a.
• NCBI ID: WP_002888947.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain CRKP_14
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1775647..1786447

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OH499_RS08875	gspH	1775803..1776318 (+)	516	WP_004151939.1	type II secretion system minor pseudopilin GspH	-
OH499_RS08880	gspI	1776315..1776680 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
OH499_RS08885	gspJ	1776677..1777273 (+)	597	WP_004151940.1	type II secretion system minor pseudopilin GspJ	-
OH499_RS08890	gspK	1777270..1778256 (+)	987	WP_004151941.1	type II secretion system minor pseudopilin GspK	-
OH499_RS08895	gspL	1778243..1779436 (+)	1194	WP_004151942.1	type II secretion system protein GspL	-
OH499_RS08900	-	1779429..1779914 (+)	486	WP_004151943.1	type II secretion system protein M	-
OH499_RS08905	-	1779904..1780650 (+)	747	WP_004145897.1	type II secretion system protein N	-
OH499_RS08910	pilD	1780647..1781447 (+)	801	WP_002888947.1	prepilin peptidase	Machinery gene
OH499_RS08915	hrpB	1781495..1783924 (-)	2430	WP_004151944.1	ATP-dependent helicase HrpB	-
OH499_RS08920	thpR	1783997..1784533 (+)	537	WP_004145901.1	RNA 2',3'-cyclic phosphodiesterase	-
OH499_RS08925	sfsA	1784533..1785249 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
OH499_RS08930	dksA	1785412..1785867 (+)	456	WP_094681732.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29419.04 Da
• Isoelectric Point: 8.8894

>NTDB_id=740090 OH499_RS08910 WP_002888947.1 1780647..1781447(+) (pilD) [Klebsiella pneumoniae strain CRKP_14]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGSIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=740090 OH499_RS08910 WP_002888947.1 1780647..1781447(+) (pilD) [Klebsiella pneumoniae strain CRKP_14]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTAGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGA
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTGCTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGAGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425