Detailed information NTG0740080

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: OH505_RS22405
• Genome accession: NZ_CP107447
• Coordinates: 4501724..4502524 (+)
• Length: 266 a.a.
• NCBI ID: WP_002888947.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain CRKP_15
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4496724..4507524

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OH505_RS22370	gspH	4496880..4497395 (+)	516	WP_004151939.1	type II secretion system minor pseudopilin GspH	-
OH505_RS22375	gspI	4497392..4497757 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
OH505_RS22380	gspJ	4497754..4498350 (+)	597	WP_004151940.1	type II secretion system minor pseudopilin GspJ	-
OH505_RS22385	gspK	4498347..4499333 (+)	987	WP_004151941.1	type II secretion system minor pseudopilin GspK	-
OH505_RS22390	gspL	4499320..4500513 (+)	1194	WP_004151942.1	type II secretion system protein GspL	-
OH505_RS22395	-	4500506..4500991 (+)	486	WP_004151943.1	type II secretion system protein M	-
OH505_RS22400	-	4500981..4501727 (+)	747	WP_004145897.1	type II secretion system protein N	-
OH505_RS22405	pilD	4501724..4502524 (+)	801	WP_002888947.1	prepilin peptidase	Machinery gene
OH505_RS22410	hrpB	4502572..4505001 (-)	2430	WP_004151944.1	ATP-dependent helicase HrpB	-
OH505_RS22415	thpR	4505074..4505610 (+)	537	WP_004145901.1	RNA 2',3'-cyclic phosphodiesterase	-
OH505_RS22420	sfsA	4505610..4506326 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
OH505_RS22425	dksA	4506489..4506944 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29419.04 Da
• Isoelectric Point: 8.8894

>NTDB_id=740080 OH505_RS22405 WP_002888947.1 4501724..4502524(+) (pilD) [Klebsiella pneumoniae strain CRKP_15]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGSIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=740080 OH505_RS22405 WP_002888947.1 4501724..4502524(+) (pilD) [Klebsiella pneumoniae strain CRKP_15]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTAGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGA
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTGCTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGAGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425