Detailed information NTG0739795

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: OH501_RS18300
• Genome accession: NZ_CP107390
• Coordinates: 3734961..3735761 (-)
• Length: 266 a.a.
• NCBI ID: WP_002888947.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain CRKP_28
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3729961..3740761

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OH501_RS18280	dksA	3730541..3730996 (-)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-
OH501_RS18285	sfsA	3731159..3731875 (-)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
OH501_RS18290	thpR	3731875..3732411 (-)	537	WP_004145901.1	RNA 2',3'-cyclic phosphodiesterase	-
OH501_RS18295	hrpB	3732484..3734913 (+)	2430	WP_004151944.1	ATP-dependent helicase HrpB	-
OH501_RS18300	pilD	3734961..3735761 (-)	801	WP_002888947.1	prepilin peptidase	Machinery gene
OH501_RS18305	-	3735758..3736504 (-)	747	WP_004145897.1	type II secretion system protein N	-
OH501_RS18310	-	3736494..3736979 (-)	486	WP_004151943.1	type II secretion system protein M	-
OH501_RS18315	gspL	3736972..3738165 (-)	1194	WP_004151942.1	type II secretion system protein GspL	-
OH501_RS18320	gspK	3738152..3739138 (-)	987	WP_004151941.1	type II secretion system minor pseudopilin GspK	-
OH501_RS18325	gspJ	3739135..3739731 (-)	597	WP_004151940.1	type II secretion system minor pseudopilin GspJ	-
OH501_RS18330	gspI	3739728..3740093 (-)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
OH501_RS18335	gspH	3740090..3740605 (-)	516	WP_004151939.1	type II secretion system minor pseudopilin GspH	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29419.04 Da
• Isoelectric Point: 8.8894

>NTDB_id=739795 OH501_RS18300 WP_002888947.1 3734961..3735761(-) (pilD) [Klebsiella pneumoniae strain CRKP_28]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGSIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=739795 OH501_RS18300 WP_002888947.1 3734961..3735761(-) (pilD) [Klebsiella pneumoniae strain CRKP_28]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTAGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGA
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTGCTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGAGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425