Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   K5607_RS04255 Genome accession   NZ_AP019782
Coordinates   868629..869990 (+) Length   453 a.a.
NCBI ID   WP_221048306.1    Uniprot ID   A0A8D4VN07
Organism   Methylogaea oryzae strain E10     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 863629..874990
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5607_RS04230 (MoryE10_08250) - 864170..865114 (-) 945 WP_221048303.1 Nudix family hydrolase -
  K5607_RS04235 (MoryE10_08260) - 865249..866184 (+) 936 WP_221048304.1 alpha/beta hydrolase -
  K5607_RS04240 (MoryE10_08270) - 866222..866590 (-) 369 WP_246598948.1 DUF167 family protein -
  K5607_RS04245 (MoryE10_08280) - 866646..867707 (-) 1062 WP_221048305.1 nitrate- and nitrite sensing domain-containing protein -
  K5607_RS04250 (MoryE10_08290) budA 867889..868593 (+) 705 WP_054774465.1 acetolactate decarboxylase -
  K5607_RS04255 (MoryE10_08300) radA 868629..869990 (+) 1362 WP_221048306.1 DNA repair protein RadA Machinery gene
  K5607_RS04260 (MoryE10_08310) - 870028..872991 (-) 2964 WP_221048307.1 mechanosensitive ion channel domain-containing protein -
  K5607_RS04265 (MoryE10_08320) - 873016..873408 (-) 393 WP_221048308.1 PilZ domain-containing protein -
  K5607_RS04270 (MoryE10_08330) - 873411..874022 (-) 612 WP_221048309.1 FHA domain-containing protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 48558.86 Da        Isoelectric Point: 7.4572

>NTDB_id=73973 K5607_RS04255 WP_221048306.1 868629..869990(+) (radA) [Methylogaea oryzae strain E10]
MARNKDARVLYRCTECGHAQPKWGGQCPGCGGWNTLVESLEERAPARHGGYAGAAGGEVVPLSTVEAQDVRRVLSGMEEL
DRVLGGGLVPGSAVLLGGDPGIGKSTLLLQTVAALSGSLSTLYITGEESVQQVSLRAKRLELGVERVYALAETSLERIVA
TAQERKPQVLVVDSIQTVYTELMQSAPGSVAQVRECAAQLVRLVKQTGTVVFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GDPGSRFRVVRAFKNRFGAVNELGVFAMTEGGLKEVKNPSAIFLSRHDGETPGSVVTVTREGSRPMLVEVQSLVDESQLA
APRRVTLGMEQNRLAMLLAVLHRHGGVPMGNQDVFINLVGGVRLTETAGDLAVVFSVLSSYRDKPVPRDWVLFGELGLTG
EVRPVPNGDERLKEVSKHGFKTALVPHKNAPRVAIPGLEVIAVKTLREALEAF

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=73973 K5607_RS04255 WP_221048306.1 868629..869990(+) (radA) [Methylogaea oryzae strain E10]
ATGGCCCGCAATAAAGACGCCCGCGTTTTGTACCGCTGCACCGAGTGCGGCCACGCCCAGCCCAAGTGGGGCGGCCAATG
TCCCGGCTGCGGCGGTTGGAACACCCTGGTGGAGTCCCTGGAAGAGCGCGCGCCGGCGCGCCACGGCGGTTACGCCGGCG
CCGCCGGCGGCGAAGTGGTGCCGCTGTCCACGGTGGAGGCGCAGGACGTGCGGCGGGTGCTGTCGGGCATGGAGGAGCTG
GACCGGGTGCTGGGCGGCGGCCTGGTGCCGGGCTCGGCGGTGCTGCTGGGCGGCGATCCCGGCATCGGCAAGTCCACCTT
GCTGCTGCAGACGGTGGCGGCATTGAGCGGCAGCCTGTCCACCCTGTACATCACCGGCGAGGAGTCGGTGCAGCAGGTGA
GCTTGCGAGCCAAGCGGCTGGAATTGGGAGTGGAGCGGGTGTACGCCCTGGCGGAAACGTCGCTGGAGCGCATCGTCGCC
ACCGCCCAGGAGCGCAAGCCGCAGGTGCTGGTGGTGGATTCGATCCAGACCGTCTACACGGAGCTGATGCAGTCGGCCCC
CGGCTCGGTGGCCCAGGTGCGCGAATGCGCGGCGCAATTGGTGCGGCTGGTCAAGCAGACGGGGACGGTGGTGTTCCTCG
TCGGCCACGTCACCAAGGAAGGCGCCCTGGCCGGCCCGCGCGTGCTGGAGCACATGGTGGACACGGTGCTGTACTTCGAG
GGCGATCCCGGCAGCCGCTTCCGCGTGGTGCGCGCGTTCAAGAACCGCTTCGGCGCGGTGAACGAGCTGGGCGTGTTCGC
CATGACCGAGGGCGGCTTGAAGGAAGTGAAAAACCCCTCGGCCATTTTTCTGTCGCGCCACGACGGCGAAACGCCGGGCA
GCGTGGTCACGGTCACCCGCGAAGGCAGCCGCCCCATGCTGGTGGAAGTGCAGTCCCTGGTGGACGAAAGCCAGCTGGCC
GCGCCGCGCCGCGTGACCTTAGGCATGGAGCAAAACCGACTGGCCATGCTGCTGGCCGTGCTGCACCGCCACGGCGGCGT
GCCCATGGGCAACCAGGACGTGTTCATCAATCTGGTGGGCGGCGTGCGCCTGACCGAAACGGCCGGCGACTTGGCGGTGG
TGTTCTCGGTGCTGTCCAGCTACCGCGACAAGCCGGTGCCGCGGGATTGGGTGCTGTTCGGCGAACTGGGCCTGACCGGG
GAAGTGCGCCCGGTGCCCAACGGCGACGAGCGGCTCAAGGAAGTGTCAAAACACGGTTTCAAGACCGCCCTGGTGCCCCA
CAAAAACGCCCCGCGCGTGGCGATTCCCGGCCTGGAAGTGATCGCGGTGAAGACGCTGCGGGAGGCGCTGGAGGCGTTTT
GA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(66-221)

Subunit ChlI of Mg-chelatase (ChlI)

(345-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(11-38)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.89

100

0.501
  radA Streptococcus pneumoniae Rx1

46.374

100

0.466
  radA Streptococcus pneumoniae D39

46.374

100

0.466
  radA Streptococcus pneumoniae R6

46.374

100

0.466
  radA Streptococcus pneumoniae TIGR4

46.374

100

0.466
  radA Streptococcus mitis SK321

46.374

100

0.466
  radA Streptococcus mitis NCTC 12261

46.137

100

0.461

Multiple sequence alignment