Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   P8T65_RS31430 Genome accession   NZ_CP122458
Coordinates   7150442..7152376 (-) Length   644 a.a.
NCBI ID   WP_316728553.1    Uniprot ID   -
Organism   Streptomyces sp. 11x1     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 7145442..7157376
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P8T65_RS31420 (P8T65_31375) dnaG 7146802..7148703 (+) 1902 WP_316728550.1 DNA primase -
  P8T65_RS31425 (P8T65_31380) - 7148918..7150252 (+) 1335 WP_316728552.1 RNA polymerase sigma factor -
  P8T65_RS31430 (P8T65_31385) rcrQ 7150442..7152376 (-) 1935 WP_316728553.1 ABC transporter ATP-binding protein Regulator
  P8T65_RS31435 (P8T65_31390) rcrP 7152376..7154109 (-) 1734 WP_316728554.1 ABC transporter ATP-binding protein Regulator
  P8T65_RS31440 (P8T65_31395) - 7154405..7155859 (-) 1455 WP_316728556.1 FGGY family carbohydrate kinase -
  P8T65_RS31445 (P8T65_31400) - 7155929..7156234 (-) 306 WP_045557412.1 hypothetical protein -
  P8T65_RS31465 (P8T65_31420) - 7157107..7157376 (-) 270 Protein_6225 YnfA family protein -

Sequence

Protein


Download         Length: 644 a.a.        Molecular weight: 69538.93 Da        Isoelectric Point: 5.2168

>NTDB_id=739716 P8T65_RS31430 WP_316728553.1 7150442..7152376(-) (rcrQ) [Streptomyces sp. 11x1]
MAGPLARMAGAGAPDQHSMDFKGSGKRLLAQFRPERFTMYAMVLCAVISVGLSVLGPWILGKATDLVFAGVVGREMPAGA
TKAEVLESMRERGDGAIADMLSGTDFTPGKGIDFEAVGTVLLVALGIFLVAGLLMAVATRLSNRAINRTVYHMREQLQAK
LSRLPLSYFDKRQRGEVLSRATNDIDNIGQTLQQSMGQLINSLLTIIGVLAMMFWVSPLLALVALVTVPVSFLVATRVGK
RSQPHFVAQWRVTGRLNAHIEEMYTGHTLVKVFGRQEESAQQFAEENERLYEAGFKAQFNSGIMQPLMLFVSNINYVLVA
VVGGLRVATGALSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERIFELLDAEEQEADAVPGVRPEELRGRVALE
GVSFRYEADKPLIEDLSLVVEPGHTVAIVGPTGAGKTTLVNLLMRFYEVTGGRITLDGVDVASMSRDELRDGIGMVLQDT
WLFGGTIAENIAYGASASRKVTRGEVEEAARAAHADRFIRTLPDGYDTVIDDEGTGVSAGEKQLITIARAFLSDPVILVL
DEATSSVDTRTEVLIQKAMAKLAHGRTSFVIAHRLSTVRDADTILVMENGSIVEQGAHEELLAAGGAYARLYRAQFAEAV
AEVD

Nucleotide


Download         Length: 1935 bp        

>NTDB_id=739716 P8T65_RS31430 WP_316728553.1 7150442..7152376(-) (rcrQ) [Streptomyces sp. 11x1]
ATGGCCGGGCCGTTGGCACGGATGGCGGGGGCCGGGGCCCCCGATCAGCACTCCATGGACTTCAAGGGGTCCGGGAAACG
GCTGCTCGCGCAGTTCAGGCCCGAGCGGTTCACGATGTACGCGATGGTCCTGTGCGCGGTGATCAGCGTCGGACTGTCCG
TGCTGGGGCCGTGGATCCTCGGCAAGGCGACCGACCTGGTGTTCGCGGGTGTCGTCGGGCGGGAGATGCCGGCGGGCGCG
ACCAAGGCCGAGGTCCTGGAGTCCATGCGGGAGCGCGGGGACGGCGCGATCGCCGACATGCTGTCGGGCACGGACTTCAC
ACCGGGCAAGGGCATCGATTTCGAGGCCGTCGGCACAGTTCTTCTGGTTGCCCTCGGCATCTTCCTGGTCGCGGGGCTGC
TGATGGCGGTGGCCACGCGGCTCTCCAACCGAGCGATCAACCGGACCGTCTACCACATGCGCGAACAGCTCCAGGCGAAG
CTGTCGCGGCTGCCGCTGTCGTACTTCGACAAGCGGCAGCGCGGTGAGGTGCTGAGCCGGGCGACCAACGACATCGACAA
CATCGGGCAGACGCTGCAACAGTCGATGGGCCAGCTGATCAACTCACTGCTCACCATCATCGGCGTGCTGGCGATGATGT
TCTGGGTGTCGCCGCTGCTGGCGCTGGTCGCGCTGGTGACCGTGCCGGTGTCGTTCCTGGTGGCCACGCGGGTCGGCAAG
CGGTCGCAGCCGCACTTCGTCGCGCAGTGGCGGGTGACGGGCAGGCTCAACGCCCACATCGAGGAGATGTACACCGGGCA
CACGCTGGTGAAGGTGTTCGGGCGTCAGGAGGAGTCGGCGCAGCAGTTCGCCGAGGAGAACGAGCGGCTGTACGAGGCCG
GGTTCAAGGCCCAGTTCAACAGCGGCATCATGCAGCCGCTGATGTTGTTCGTGTCGAACATCAACTATGTGCTCGTCGCC
GTGGTGGGCGGGCTGCGGGTCGCGACCGGTGCGCTGTCGATCGGTGACGTGCAGGCCTTCATCCAGTACTCGCGGCAGTT
CTCGATGCCGCTGACGCAGGTGGCGTCCATGGCCAACCTCGTGCAGTCGGGGGTCGCCTCCGCCGAGCGGATCTTCGAAC
TGCTCGACGCGGAGGAGCAGGAGGCCGACGCGGTGCCCGGGGTGCGGCCCGAGGAGCTGCGGGGGCGGGTGGCGCTGGAG
GGGGTGTCCTTCCGGTACGAGGCCGACAAGCCGCTGATCGAGGATCTGTCGCTGGTCGTCGAGCCGGGGCACACGGTGGC
GATCGTGGGGCCGACGGGCGCGGGCAAGACCACGCTGGTGAACCTGTTGATGCGGTTCTACGAGGTCACGGGCGGGCGGA
TCACGCTCGACGGGGTCGATGTCGCGTCCATGTCGCGGGACGAACTGCGCGACGGGATAGGAATGGTGCTCCAGGACACC
TGGCTGTTCGGCGGGACCATCGCGGAGAACATCGCGTATGGGGCGTCCGCGTCGCGGAAGGTGACGCGGGGTGAGGTCGA
GGAGGCGGCTCGGGCGGCGCACGCGGATCGGTTCATCCGGACGCTGCCGGACGGGTACGACACCGTGATCGACGACGAGG
GGACCGGGGTGAGCGCCGGTGAGAAGCAGCTCATCACGATCGCTCGGGCGTTCCTGTCGGATCCGGTGATCCTGGTGCTG
GACGAGGCGACGTCCTCGGTGGACACGCGGACCGAGGTGTTGATCCAGAAGGCGATGGCGAAGCTGGCGCACGGGCGGAC
GTCGTTCGTGATCGCGCATCGGCTGTCGACGGTTCGGGACGCGGACACGATTCTGGTGATGGAGAACGGTTCCATCGTGG
AGCAGGGGGCGCACGAGGAGTTGCTGGCCGCGGGTGGGGCGTATGCGCGGCTGTATCGGGCCCAGTTCGCGGAGGCGGTG
GCCGAGGTGGACTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(414-565)

ABC transporter transmembrane region (ABC_membrane)

(41-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

40.323

96.273

0.388