Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   OH511_RS22585 Genome accession   NZ_CP107363
Coordinates   4639890..4640486 (+) Length   198 a.a.
NCBI ID   WP_004150836.1    Uniprot ID   A0A0H3GL50
Organism   Klebsiella pneumoniae strain CRKP_33     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4634890..4645486
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OH511_RS22565 - 4635082..4636839 (-) 1758 WP_002898401.1 AAA family ATPase -
  OH511_RS22570 matP 4637025..4637477 (+) 453 WP_002898404.1 macrodomain Ter protein MatP -
  OH511_RS22575 ompA 4637609..4638679 (-) 1071 WP_062954987.1 porin OmpA -
  OH511_RS22580 sulA 4639032..4639541 (-) 510 WP_002898418.1 SOS-induced cell division inhibitor SulA -
  OH511_RS22585 sxy/tfoX 4639890..4640486 (+) 597 WP_004150836.1 TfoX/Sxy family DNA transformation protein Regulator
  OH511_RS22590 yccS 4640500..4642635 (-) 2136 WP_002898422.1 YccS family putative transporter -
  OH511_RS22595 - 4642653..4643099 (-) 447 WP_002898425.1 YccF domain-containing protein -
  OH511_RS22600 helD 4643224..4645278 (+) 2055 WP_002898429.1 DNA helicase IV -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22576.15 Da        Isoelectric Point: 10.1298

>NTDB_id=739678 OH511_RS22585 WP_004150836.1 4639890..4640486(+) (sxy/tfoX) [Klebsiella pneumoniae strain CRKP_33]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNYRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=739678 OH511_RS22585 WP_004150836.1 4639890..4640486(+) (sxy/tfoX) [Klebsiella pneumoniae strain CRKP_33]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGGAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTACCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3GL50

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51