Detailed information NTG0739638

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QBY76_RS20180
• Genome accession: NZ_CP122454
• Coordinates: 4139702..4140694 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 82.0311
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 4134702..4145694

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QBY76_RS20160 (QBY76_20160)	ygbM	4135333..4136109 (+)	777	WP_001136911.1	HPr family phosphocarrier protein	-
QBY76_RS20165 (QBY76_20165)	ygbN	4136198..4137562 (+)	1365	WP_021531526.1	GntP family transporter	-
QBY76_RS20170 (QBY76_20170)	-	4137705..4138748 (-)	1044	WP_001161584.1	MBL fold metallo-hydrolase	-
QBY76_RS20175 (QBY76_20175)	-	4138973..4139524 (+)	552	WP_001179443.1	flavodoxin family protein	-
QBY76_RS20180 (QBY76_20180)	rpoS	4139702..4140694 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
QBY76_RS20185 (QBY76_20185)	nlpD	4140757..4141851 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
QBY76_RS20190 (QBY76_20190)	pcm	4142036..4142662 (-)	627	WP_000254701.1	protein-L-isoaspartate O-methyltransferase	-
QBY76_RS20195 (QBY76_20195)	surE	4142656..4143417 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
QBY76_RS20200 (QBY76_20200)	truD	4143398..4144447 (-)	1050	WP_000568931.1	tRNA pseudouridine(13) synthase TruD	-
QBY76_RS20205 (QBY76_20205)	ispF	4144444..4144923 (-)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QBY76_RS20210 (QBY76_20210)	ispD	4144923..4145633 (-)	711	WP_001539454.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=739638 QBY76_RS20180 WP_000081550.1 4139702..4140694(-) (rpoS) [Escherichia coli strain 82.0311]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=739638 QBY76_RS20180 WP_000081550.1 4139702..4140694(-) (rpoS) [Escherichia coli strain 82.0311]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715