Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   OH536_RS17815 Genome accession   NZ_CP107327
Coordinates   3529966..3530562 (-) Length   198 a.a.
NCBI ID   WP_004150836.1    Uniprot ID   A0A0H3GL50
Organism   Klebsiella pneumoniae strain CRKP_39     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3524966..3535562
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OH536_RS17800 helD 3525174..3527228 (-) 2055 WP_002898429.1 DNA helicase IV -
  OH536_RS17805 - 3527353..3527799 (+) 447 WP_002898425.1 YccF domain-containing protein -
  OH536_RS17810 yccS 3527817..3529952 (+) 2136 WP_002898422.1 YccS family putative transporter -
  OH536_RS17815 sxy/tfoX 3529966..3530562 (-) 597 WP_004150836.1 TfoX/Sxy family DNA transformation protein Regulator
  OH536_RS17820 sulA 3530911..3531420 (+) 510 WP_002898418.1 SOS-induced cell division inhibitor SulA -
  OH536_RS17825 ompA 3531773..3532870 (+) 1098 WP_236949971.1 porin OmpA -
  OH536_RS17830 matP 3533002..3533454 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  OH536_RS17835 - 3533640..3535397 (+) 1758 WP_002898401.1 AAA family ATPase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22576.15 Da        Isoelectric Point: 10.1298

>NTDB_id=739524 OH536_RS17815 WP_004150836.1 3529966..3530562(-) (sxy/tfoX) [Klebsiella pneumoniae strain CRKP_39]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNYRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=739524 OH536_RS17815 WP_004150836.1 3529966..3530562(-) (sxy/tfoX) [Klebsiella pneumoniae strain CRKP_39]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGGAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTACCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3GL50

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51