Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   QBW33_RS15390 Genome accession   NZ_CP122368
Coordinates   3399653..3401065 (+) Length   470 a.a.
NCBI ID   WP_014155558.1    Uniprot ID   A0ABZ1K4F5
Organism   Streptomyces sp. B21-104     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3394653..3406065
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBW33_RS15370 (QBW33_15385) - 3394880..3395692 (-) 813 WP_030122897.1 sugar phosphate isomerase/epimerase -
  QBW33_RS15375 (QBW33_15390) - 3395784..3396734 (-) 951 WP_014155561.1 Ppx/GppA phosphatase family protein -
  QBW33_RS15380 (QBW33_15395) - 3396767..3397609 (+) 843 WP_014155560.1 hypothetical protein -
  QBW33_RS15385 (QBW33_15400) - 3397689..3399509 (-) 1821 WP_319716659.1 hypothetical protein -
  QBW33_RS15390 (QBW33_15405) radA/sms 3399653..3401065 (+) 1413 WP_014155558.1 DNA repair protein RadA Machinery gene
  QBW33_RS15395 (QBW33_15410) disA 3401145..3402269 (+) 1125 WP_014155557.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  QBW33_RS15400 (QBW33_15415) - 3402348..3403334 (-) 987 WP_338649414.1 aldo/keto reductase -
  QBW33_RS15405 (QBW33_15420) - 3403380..3404150 (-) 771 WP_030880921.1 alpha/beta fold hydrolase -
  QBW33_RS15410 (QBW33_15425) - 3404147..3405385 (-) 1239 WP_338649415.1 cytochrome P450 -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 49531.62 Da        Isoelectric Point: 8.2515

>NTDB_id=739366 QBW33_RS15390 WP_014155558.1 3399653..3401065(+) (radA/sms) [Streptomyces sp. B21-104]
MAARTKSAKDRPSYRCTECGWTTAKWLGRCPECQAWGTVEEFGGAPAVRTTAAGRVSSAALPIGQVDSRQATARSTGVGE
LDRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAASDDHRTLYVTAEESASQVRMRADRIRAINDHLYLAAETDLSAV
LGHLDAVKPSLLVLDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLS
FEGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRDEPVPGTCLTVTLEGKRPLVAEVQALTVDSQ
IPSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLTEPAADLAIALALASAASDTPLPKNLVAIGEVG
LAGEVRRVTGVQRRLAEAYRLGFKHALVPRDPGQVPAGMKVTEVADMGDALRVLPRRSRPDGPQEDGARR

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=739366 QBW33_RS15390 WP_014155558.1 3399653..3401065(+) (radA/sms) [Streptomyces sp. B21-104]
ATGGCTGCCCGTACGAAATCCGCGAAGGACCGGCCGTCCTACCGCTGCACCGAATGCGGCTGGACGACCGCCAAATGGCT
CGGCCGCTGCCCCGAATGCCAGGCCTGGGGGACGGTCGAGGAGTTCGGCGGCGCCCCCGCCGTCCGCACGACCGCCGCGG
GCCGGGTGTCCTCCGCCGCCCTGCCGATCGGCCAGGTCGACAGCCGGCAGGCGACCGCGCGCTCGACCGGGGTCGGCGAG
CTGGACCGCGTGCTCGGCGGAGGCCTCGTGCCCGGTGCGGTCGTGCTGCTCGCGGGCGAGCCGGGCGTCGGCAAGTCGAC
GCTGCTGCTGGACGTGGCCGCCAAGGCGGCGAGCGACGACCACCGCACGCTCTACGTCACGGCCGAGGAGTCCGCCAGCC
AGGTGCGGATGCGGGCCGACCGGATCCGGGCCATCAACGACCACCTGTACCTCGCCGCCGAGACCGACCTCTCGGCGGTC
CTGGGACATCTGGACGCGGTCAAGCCGTCCCTGCTCGTCCTCGACTCGGTGCAGACGGTGGCCTCCCCCGAGATCGACGG
CGCGCCCGGCGGCATGGCGCAGGTCCGCGAGGTGGCGGGCGCGCTCATCCGGGCCTCGAAGGAGCGCGGCATGTCGACGC
TCCTGGTCGGCCATGTGACCAAGGACGGCGCCATCGCGGGACCACGGCTCCTGGAGCACCTCGTCGACGTGGTGCTGTCC
TTCGAGGGCGACCGGCACGCACGCCTGCGGCTGGTGCGCGGCGTCAAGAACAGGTACGGGGCCACCGACGAGGTCGGCTG
CTTCGAGCTGCACGACGAGGGCATCACCGGCCTGGCGGATCCGTCGGGGCTCTTCCTCACCCGCCGCGACGAGCCGGTCC
CCGGCACCTGCCTGACGGTCACCCTCGAGGGCAAGCGCCCACTCGTCGCCGAGGTGCAGGCCCTGACGGTCGACTCGCAG
ATCCCCTCGCCCCGGCGCACCACCTCGGGCCTGGAGACCTCCCGCGTCTCGATGATGCTGGCCGTCCTCGAGCAGCGGGG
CCGGATCAGCGCGCTCGGCAAGCGGGACATCTACAGTGCGACGGTGGGCGGCGTGAAGCTCACGGAACCGGCCGCGGACC
TCGCGATCGCCCTGGCACTGGCCAGTGCGGCCAGCGACACACCGCTCCCGAAGAACCTGGTCGCGATCGGTGAGGTGGGT
CTCGCCGGGGAGGTCAGGAGGGTCACCGGGGTCCAGCGCAGGCTGGCGGAGGCGTACCGTCTCGGGTTCAAGCACGCCCT
GGTCCCGAGGGACCCCGGGCAGGTCCCGGCCGGCATGAAGGTCACGGAAGTGGCCGACATGGGCGACGCCCTGAGAGTCC
TCCCCCGCCGGTCTCGGCCGGACGGACCACAGGAGGACGGCGCACGCCGGTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(85-223)

Subunit ChlI of Mg-chelatase (ChlI)

(371-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.488

96.383

0.419
  radA Streptococcus pneumoniae Rx1

41.722

96.383

0.402
  radA Streptococcus pneumoniae D39

41.722

96.383

0.402
  radA Streptococcus pneumoniae R6

41.722

96.383

0.402
  radA Streptococcus pneumoniae TIGR4

41.722

96.383

0.402
  radA Streptococcus mitis SK321

43.124

91.277

0.394
  radA Streptococcus mitis NCTC 12261

43.124

91.277

0.394