Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   OFU58_RS17740 Genome accession   NZ_CP107289
Coordinates   3652556..3652882 (-) Length   108 a.a.
NCBI ID   WP_000801427.1    Uniprot ID   N9J3X5
Organism   Acinetobacter pittii strain BM4623     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3647556..3657882
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OFU58_RS17720 (OFU58_17725) - 3647663..3648289 (-) 627 WP_063097989.1 FHA domain-containing protein -
  OFU58_RS17725 (OFU58_17730) gspD 3648330..3650600 (-) 2271 WP_069036353.1 type II secretion system secretin GspD -
  OFU58_RS17730 (OFU58_17735) - 3650642..3651478 (-) 837 WP_069036352.1 type II secretion system protein N -
  OFU58_RS17735 (OFU58_17740) gspN 3651478..3652221 (-) 744 WP_002121195.1 type II secretion system protein N -
  OFU58_RS17740 (OFU58_17745) hns 3652556..3652882 (-) 327 WP_000801427.1 H-NS histone family protein Regulator
  OFU58_RS17745 (OFU58_17750) - 3653077..3653517 (-) 441 WP_069036351.1 thioesterase family protein -
  OFU58_RS17750 (OFU58_17755) - 3653525..3654718 (-) 1194 WP_069036350.1 hypothetical protein -
  OFU58_RS17755 (OFU58_17760) - 3654728..3655570 (-) 843 WP_063097985.1 hypothetical protein -
  OFU58_RS17760 (OFU58_17765) hemD 3655579..3656346 (-) 768 WP_069036349.1 uroporphyrinogen-III synthase -
  OFU58_RS17765 (OFU58_17770) hemC 3656350..3657267 (-) 918 WP_032037675.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12462.12 Da        Isoelectric Point: 5.0524

>NTDB_id=739357 OFU58_RS17740 WP_000801427.1 3652556..3652882(-) (hns) [Acinetobacter pittii strain BM4623]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=739357 OFU58_RS17740 WP_000801427.1 3652556..3652882(-) (hns) [Acinetobacter pittii strain BM4623]
ATGAAACCGGATATCAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGTAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAGATTGCTGAAAATGTAGGTTTCAGTGTTGAACAACTTC
TTGAGTTTGGTGCTCAAAAACGTAAGAAAACAACTCGTAAATCTGTTGAGCCTCGTTACCGCAACAAAAACAATGCTGAA
GAGACTTGGACTGGTCGTGGTAAACAACCACGCTGGTTAGTTGCTGAAATTGAAAAAGGCGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9J3X5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

100

1