Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   OFU58_RS02525 Genome accession   NZ_CP107289
Coordinates   515241..516125 (+) Length   294 a.a.
NCBI ID   WP_280587114.1    Uniprot ID   -
Organism   Acinetobacter pittii strain BM4623     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 510241..521125
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OFU58_RS02500 (OFU58_02500) - 510554..511801 (-) 1248 WP_002119535.1 YihY family inner membrane protein -
  OFU58_RS02505 (OFU58_02505) wrbA 512163..512765 (+) 603 WP_079381004.1 NAD(P)H:quinone oxidoreductase -
  OFU58_RS02510 (OFU58_02510) xpt 512817..513392 (-) 576 WP_002119547.1 xanthine phosphoribosyltransferase -
  OFU58_RS02515 (OFU58_02515) - 513465..514178 (-) 714 WP_002119525.1 DUF3108 domain-containing protein -
  OFU58_RS02520 (OFU58_02520) - 514337..515008 (-) 672 WP_002119526.1 hypothetical protein -
  OFU58_RS02525 (OFU58_02525) tonB2 515241..516125 (+) 885 WP_280587114.1 TonB family protein Machinery gene
  OFU58_RS02530 (OFU58_02530) ybeY 516177..516653 (-) 477 WP_280587116.1 rRNA maturation RNase YbeY -
  OFU58_RS02535 (OFU58_02535) phoL 516663..517751 (-) 1089 WP_280587118.1 PhoH family protein -
  OFU58_RS02540 (OFU58_02540) miaB 517789..519240 (-) 1452 WP_002119558.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -

Sequence

Protein


Download         Length: 294 a.a.        Molecular weight: 33671.20 Da        Isoelectric Point: 7.6060

>NTDB_id=739334 OFU58_RS02525 WP_280587114.1 515241..516125(+) (tonB2) [Acinetobacter pittii strain BM4623]
MLNKRSLSIEPFHYWWQDRVFIAATILAILLHIFVLLIHFAMPSPSEQSTKEIAISIRPSNEPVHQADFLAQADQQGSGA
FREAHRTSSDTPNPMLNDASTGDTELESLQKIQQQRELKFEEKVLMTVLSWQKQADASQRKKELEQLQSQFQAKAAMVAS
LEAQYLQRRQDFSRQQKIKTVDGIQAKKDASAAYLDKFREKVELYGNRYYPEEAKQQQLRGEVRLMVILNAQGGIRAIRL
LESSGHSILDEAAKSSVRRGAPFGHFDANMKDISELRIVRTWRFDPAEAEFEVH

Nucleotide


Download         Length: 885 bp        

>NTDB_id=739334 OFU58_RS02525 WP_280587114.1 515241..516125(+) (tonB2) [Acinetobacter pittii strain BM4623]
ATGTTGAACAAAAGAAGTTTATCCATAGAGCCTTTTCATTATTGGTGGCAAGACCGAGTCTTTATTGCTGCAACAATATT
AGCAATCTTACTCCATATTTTTGTATTGCTCATTCACTTTGCCATGCCTAGCCCATCAGAGCAATCTACTAAAGAAATTG
CAATTTCAATCCGGCCAAGCAATGAGCCAGTTCATCAGGCAGATTTTTTAGCGCAAGCAGATCAGCAAGGCTCGGGCGCA
TTTCGTGAAGCTCATCGGACTTCTAGTGATACTCCAAATCCGATGCTCAATGATGCTTCAACTGGAGATACTGAGTTAGA
AAGTTTGCAAAAGATACAGCAACAAAGAGAGCTTAAATTTGAAGAAAAAGTTTTAATGACGGTTTTGAGTTGGCAGAAAC
AAGCGGATGCAAGTCAAAGAAAAAAAGAACTAGAACAATTACAAAGTCAATTTCAAGCGAAAGCTGCGATGGTTGCAAGC
CTTGAAGCACAATATTTGCAACGTAGACAAGATTTCAGCCGTCAGCAAAAAATCAAAACAGTCGATGGTATTCAAGCAAA
GAAAGATGCTTCGGCTGCTTATTTGGATAAGTTCCGTGAAAAAGTAGAGCTTTATGGCAACCGTTATTACCCTGAAGAAG
CCAAACAGCAACAGCTAAGAGGTGAAGTGCGTTTAATGGTAATTTTGAATGCTCAAGGCGGAATTCGTGCAATCCGTCTG
CTTGAAAGTTCAGGGCATTCAATACTAGACGAAGCAGCGAAGTCTTCAGTACGCCGCGGCGCACCATTTGGGCATTTTGA
TGCGAATATGAAAGATATTTCGGAGTTGCGTATTGTACGTACTTGGCGTTTTGACCCAGCTGAAGCTGAATTTGAGGTTC
ACTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(207-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

88.776

100

0.888