Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   OF379_RS15190 Genome accession   NZ_CP107284
Coordinates   3111712..3112341 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain SW4848     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3106712..3117341
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OF379_RS15175 (OF379_15175) helD 3106954..3109008 (-) 2055 WP_000420538.1 DNA helicase IV -
  OF379_RS15180 (OF379_15180) yccF 3109131..3109577 (+) 447 WP_001261235.1 YccF domain-containing protein -
  OF379_RS15185 (OF379_15185) yccS 3109587..3111749 (+) 2163 WP_000875041.1 YccS family putative transporter -
  OF379_RS15190 (OF379_15190) sxy/tfoX 3111712..3112341 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  OF379_RS15195 (OF379_15195) sulA 3112560..3113069 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  OF379_RS15200 (OF379_15200) ompA 3113426..3114478 (+) 1053 WP_000750418.1 porin OmpA -
  OF379_RS15205 (OF379_15205) matP 3114554..3115006 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  OF379_RS15210 (OF379_15210) ycbZ 3115192..3116952 (+) 1761 WP_000156477.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=739309 OF379_RS15190 WP_000839153.1 3111712..3112341(-) (sxy/tfoX) [Escherichia coli strain SW4848]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=739309 OF379_RS15190 WP_000839153.1 3111712..3112341(-) (sxy/tfoX) [Escherichia coli strain SW4848]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1