Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   OFO16_RS19355 Genome accession   NZ_CP107283
Coordinates   877190..878287 (-) Length   365 a.a.
NCBI ID   WP_263839946.1    Uniprot ID   -
Organism   Vibrio natriegens strain PWH3a     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 872190..883287
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OFO16_RS19340 (OFO16_19340) - 872894..873952 (-) 1059 WP_263839944.1 HlyD family secretion protein -
  OFO16_RS19345 (OFO16_19345) - 873986..874441 (-) 456 WP_014233773.1 MarR family transcriptional regulator -
  OFO16_RS19350 (OFO16_19350) luxQ 874617..877190 (-) 2574 WP_263839945.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ -
  OFO16_RS19355 (OFO16_19355) luxP 877190..878287 (-) 1098 WP_263839946.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  OFO16_RS19360 (OFO16_19360) - 878570..878884 (-) 315 WP_263839947.1 GIY-YIG nuclease family protein -
  OFO16_RS19365 (OFO16_19365) - 878884..879528 (-) 645 WP_263839948.1 YceH family protein -
  OFO16_RS19370 (OFO16_19370) - 879686..879901 (-) 216 WP_024373000.1 hypothetical protein -
  OFO16_RS19375 (OFO16_19375) - 880281..880595 (+) 315 WP_020334143.1 DUF496 family protein -
  OFO16_RS19380 (OFO16_19380) - 880728..882065 (+) 1338 WP_263839949.1 MATE family efflux transporter -
  OFO16_RS19385 (OFO16_19385) - 882156..883139 (-) 984 WP_263839950.1 Gfo/Idh/MocA family protein -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 41605.98 Da        Isoelectric Point: 5.5183

>NTDB_id=739293 OFO16_RS19355 WP_263839946.1 877190..878287(-) (luxP) [Vibrio natriegens strain PWH3a]
MKKELIFSLVLVAGIAPAAHPSQVLNGYWEYQEFLKEFPEQKQLTNALAEAVREKPVPITSEKKRELKISVVYPGQQISD
YWIRNIDAFEKRLDKLNINYQLNQVFTRPNADIKQQSLSLMEALKSNSDYLIFTLDTTRHRKFIEHVLDSKKTKLILQNI
TTPVRDWDKHQPFLYVGFDHAEGSRKLAKEFSQRFPKNSHYSVLYFSEGYISDVRGNTFINQVNRDSNFELQSAYYTKAT
KQSGYEAAKASLDKYPDVDFIYACSTDVALGAVEALAELGRDDIMINGWGGGSAELDAILNGELDITVMRMNDDTGIAMA
EAIKWDLEGKSVPTVYSGDYEVVTTSDSPERIEALRKRAFRYSDN

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=739293 OFO16_RS19355 WP_263839946.1 877190..878287(-) (luxP) [Vibrio natriegens strain PWH3a]
ATGAAAAAAGAGTTAATATTCTCCCTTGTATTAGTAGCTGGTATTGCCCCAGCAGCACATCCATCGCAAGTCCTGAATGG
ATATTGGGAATATCAAGAGTTTCTGAAAGAATTTCCGGAGCAAAAGCAACTAACCAACGCACTGGCTGAAGCTGTTAGAG
AAAAACCGGTTCCGATTACTAGCGAGAAAAAGCGTGAACTGAAAATTTCTGTCGTTTACCCAGGGCAGCAAATCTCGGAT
TACTGGATCAGAAACATTGATGCCTTTGAAAAACGGTTAGATAAGCTTAATATTAACTATCAGCTCAATCAGGTTTTTAC
TCGTCCAAACGCCGATATCAAACAGCAAAGTCTGTCTTTAATGGAGGCTTTGAAAAGCAACTCGGACTATCTCATCTTTA
CGCTCGATACCACCAGACATCGCAAATTTATTGAGCATGTCTTAGATTCGAAGAAAACCAAACTGATCTTACAAAACATT
ACGACACCAGTAAGAGACTGGGATAAACACCAGCCGTTTCTTTATGTTGGATTCGATCATGCTGAAGGCAGCAGAAAACT
GGCGAAAGAGTTTAGTCAACGCTTCCCAAAAAACAGTCACTACAGTGTGCTTTATTTTTCAGAAGGCTACATTAGTGATG
TGAGAGGGAATACATTTATTAACCAGGTAAACCGTGACAGCAACTTTGAGCTACAATCTGCATATTACACCAAGGCGACA
AAGCAGTCTGGGTATGAGGCGGCAAAAGCCAGTCTGGACAAATACCCTGATGTCGATTTTATTTATGCTTGCTCAACAGA
CGTCGCTCTTGGTGCCGTTGAAGCGCTAGCAGAACTCGGGCGCGATGATATTATGATTAATGGCTGGGGAGGGGGCTCTG
CAGAGCTAGACGCCATTTTAAATGGAGAGTTGGATATAACCGTCATGCGTATGAACGACGATACAGGTATTGCGATGGCA
GAAGCCATAAAGTGGGATCTGGAAGGGAAGTCAGTACCAACCGTATATTCTGGTGACTATGAAGTCGTCACCACATCTGA
TTCTCCTGAAAGAATAGAAGCCTTAAGAAAGCGCGCATTTAGATACTCAGATAATTGA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

64.56

99.726

0.644