Detailed information NTG0739276

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: OFO16_RS12430
• Genome accession: NZ_CP107282
• Coordinates: 2713901..2714887 (-)
• Length: 328 a.a.
• NCBI ID: WP_024372915.1
• Uniprot ID: -
• Organism: Vibrio natriegens strain PWH3a
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2708901..2719887

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OFO16_RS12415 (OFO16_12415)	recA	2709452..2710498 (-)	1047	WP_014232974.1	recombinase RecA	Machinery gene
OFO16_RS12420 (OFO16_12420)	pncC	2710689..2711180 (-)	492	WP_263837447.1	nicotinamide-nucleotide amidase	-
OFO16_RS12425 (OFO16_12425)	mutS	2711265..2713826 (+)	2562	WP_263837448.1	DNA mismatch repair protein MutS	-
OFO16_RS12430 (OFO16_12430)	rpoS	2713901..2714887 (-)	987	WP_024372915.1	RNA polymerase sigma factor RpoS	Regulator
OFO16_RS12435 (OFO16_12435)	-	2714968..2715891 (-)	924	WP_263837449.1	peptidoglycan DD-metalloendopeptidase family protein	-
OFO16_RS12440 (OFO16_12440)	-	2715905..2716531 (-)	627	WP_176293475.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
OFO16_RS12445 (OFO16_12445)	surE	2716531..2717307 (-)	777	WP_263837450.1	5'/3'-nucleotidase SurE	-
OFO16_RS12450 (OFO16_12450)	truD	2717307..2718350 (-)	1044	WP_263837451.1	tRNA pseudouridine(13) synthase TruD	-
OFO16_RS12455 (OFO16_12455)	ispF	2718393..2718872 (-)	480	WP_263837452.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
OFO16_RS12460 (OFO16_12460)	ispD	2718886..2719593 (-)	708	WP_263837453.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
OFO16_RS12465 (OFO16_12465)	ftsB	2719595..2719876 (-)	282	WP_014232984.1	cell division protein FtsB	-

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 37315.19 Da
• Isoelectric Point: 4.7268

>NTDB_id=739276 OFO16_RS12430 WP_024372915.1 2713901..2714887(-) (rpoS) [Vibrio natriegens strain PWH3a]
MSISNTVTKVEEFDFDDESVKTVASQLGKSSSTESKTAAREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALR
GDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTI
RLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDGNNSD
PEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREVLIKQGLNME
NLFNVEDD

Nucleotide

• Length: 987 bp

>NTDB_id=739276 OFO16_RS12430 WP_024372915.1 2713901..2714887(-) (rpoS) [Vibrio natriegens strain PWH3a]
ATGAGTATCAGCAACACAGTAACCAAAGTTGAAGAGTTTGATTTTGACGATGAGTCAGTGAAGACCGTTGCGAGTCAACT
CGGAAAATCATCATCCACAGAAAGCAAAACTGCTGCGCGTGAAGAATTCGATGCAAGCAGCAAGAGCTTAGATGCAACCC
AATTGTATCTAGGTGAAATTGGCTTCTCACCTCTACTCACTGCTGAAGAAGAAGTGCTTTATGCTCGACGCGCATTACGT
GGCGACGAAGCTGCTCGCAAGCGCATGATCGAAAGTAACTTACGCTTAGTTGTAAAGATCTCTCGTCGTTACAGCAATCG
CGGCTTAGCCCTTCTGGACCTGATTGAAGAAGGTAACCTTGGCTTGATCCGTGCCGTTGAGAAATTCGACCCGGAACGCG
GTTTCCGTTTCTCTACCTATGCAACATGGTGGATTCGACAAACGATCGAACGTGCGTTGATGAACCAAACTCGTACTATT
CGTCTACCGATTCACGTTGTGAAAGAGCTAAACATTTACTTGCGTACTGCGCGAGAACTTTCTCAGAAGCTCGATCATGA
ACCAACAGCCGAAGAGATTGCAGCTCAACTTGATATTCCTGTTGAAGATGTCAGCAAAATGCTTCGCTTGAATGAGCGTA
TTAGTTCTGTCGACACGCCAATTGGTGGTGATGGTGAAAAAGCACTACTTGATATCATTCCAGATGGTAACAATTCTGAC
CCCGAAGTTTCGACACAAGATGACGATATCAAGTCTTCTCTAATCCATTGGCTTGAAGAGTTGAACCCGAAACAGAAAGA
AGTGTTGGCTCGTCGTTTTGGCTTATTAGGTTATGAACCTTCAACGCTGGAAGAAGTAGGGCGTGAAATTGGACTAACTC
GTGAACGTGTTCGCCAGATCCAGGTGGAAGGTCTACGTCGTCTACGCGAAGTACTGATTAAACAGGGCTTGAATATGGAG
AACTTGTTTAACGTCGAAGATGACTAA

Domains

Predicted by InterproScan.

• Sigma-70, region 4 (Sigma70_r4) (257-310)

• Sigma-70 region 2 (Sigma70_r2) (89-158)

• Sigma-70 region 3 (Sigma70_r3) (169-242)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (51-84)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	84.132	100	0.857