Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   OFO16_RS12295 Genome accession   NZ_CP107282
Coordinates   2690484..2691002 (-) Length   172 a.a.
NCBI ID   WP_014232962.1    Uniprot ID   A0AAN0Y3W6
Organism   Vibrio natriegens strain PWH3a     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2685484..2696002
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OFO16_RS12270 (OFO16_12270) rimM 2685568..2686116 (-) 549 WP_014232958.1 ribosome maturation factor RimM -
  OFO16_RS12275 (OFO16_12275) rpsP 2686147..2686395 (-) 249 WP_005379962.1 30S ribosomal protein S16 -
  OFO16_RS12280 (OFO16_12280) ffh 2686604..2687986 (-) 1383 WP_014232959.1 signal recognition particle protein -
  OFO16_RS12285 (OFO16_12285) - 2688211..2689005 (+) 795 WP_176291533.1 inner membrane protein YpjD -
  OFO16_RS12290 (OFO16_12290) - 2689124..2690395 (+) 1272 WP_263837438.1 HlyC/CorC family transporter -
  OFO16_RS12295 (OFO16_12295) luxS 2690484..2691002 (-) 519 WP_014232962.1 S-ribosylhomocysteine lyase Regulator
  OFO16_RS12300 (OFO16_12300) - 2691072..2691677 (-) 606 WP_014232963.1 hypothetical protein -
  OFO16_RS12305 (OFO16_12305) gshA 2691702..2693270 (-) 1569 WP_263837439.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19050.76 Da        Isoelectric Point: 4.7221

>NTDB_id=739273 OFO16_RS12295 WP_014232962.1 2690484..2691002(-) (luxS) [Vibrio natriegens strain PWH3a]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRSHLNGDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWIASMEDVLKVESQNKIPELNEYQCGTAAMHSLDEAKQIAKNILDAGVSVNKNDELA
LPESMLKELRID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=739273 OFO16_RS12295 WP_014232962.1 2690484..2691002(-) (luxS) [Vibrio natriegens strain PWH3a]
ATGCCTTTACTCGATAGTTTTACTGTGGATCACACTCGTATGAATGCACCTGCTGTGCGAGTTGCGAAAACCATGCAAAC
CCCAAAAGGGGACACCATTACTGTCTTCGATTTGCGCTTTACTGCACCAAACAAAGATATCCTTTCAGAGAAAGGTATCC
ATACACTAGAGCACCTTTACGCCGGCTTTATGCGTAGCCATCTAAACGGTGACAGCGTTGAGATCATTGATATTTCACCA
ATGGGATGTCGCACTGGCTTCTACATGAGCCTGATCGGTACGCCTTCAGAGCAACAAGTCGCGGATGCTTGGATTGCATC
AATGGAAGATGTACTGAAAGTAGAAAGTCAGAACAAAATCCCTGAGCTAAATGAATACCAATGTGGCACTGCGGCAATGC
ACTCATTGGATGAAGCAAAGCAAATTGCGAAAAACATTCTGGATGCAGGTGTGTCAGTGAATAAAAATGATGAGCTAGCT
CTGCCTGAGTCGATGTTAAAAGAACTGCGTATCGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

86.55

99.419

0.86