Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   OFO16_RS10950 Genome accession   NZ_CP107282
Coordinates   2385164..2386624 (-) Length   486 a.a.
NCBI ID   WP_263837270.1    Uniprot ID   -
Organism   Vibrio natriegens strain PWH3a     
Function   promote HapR production (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 2381448..2404030 2385164..2386624 within 0
IS/Tn 2383649..2384974 2385164..2386624 flank 190


Gene organization within MGE regions


Location: 2381448..2404030
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OFO16_RS10935 (OFO16_10935) - 2381511..2382545 (+) 1035 WP_263838726.1 IS110 family transposase -
  OFO16_RS10940 (OFO16_10940) - 2382856..2383428 (+) 573 WP_263837268.1 IS110 family transposase -
  OFO16_RS10945 (OFO16_10945) - 2383649..2384974 (-) 1326 WP_263837269.1 IS4 family transposase -
  OFO16_RS10950 (OFO16_10950) luxO 2385164..2386624 (-) 1461 WP_263837270.1 sigma-54 dependent transcriptional regulator Regulator
  OFO16_RS10955 (OFO16_10955) - 2386648..2388960 (-) 2313 WP_263837271.1 response regulator -
  OFO16_RS10960 (OFO16_10960) - 2388973..2389773 (-) 801 WP_263837272.1 phosphate/phosphite/phosphonate ABC transporter substrate-binding protein -
  OFO16_RS10965 (OFO16_10965) - 2389782..2390336 (-) 555 Protein_2128 chromosome partitioning protein ParA -
  OFO16_RS24150 - 2390677..2391060 (-) 384 WP_405053782.1 transposase -
  OFO16_RS24155 - 2391082..2391385 (-) 304 Protein_2130 transposase -
  OFO16_RS10975 (OFO16_10975) - 2391482..2392402 (+) 921 WP_263837274.1 IS5 family transposase -
  OFO16_RS10980 (OFO16_10980) - 2392709..2393524 (+) 816 WP_263837275.1 CsgG/HfaB family protein -
  OFO16_RS10985 (OFO16_10985) - 2393521..2394189 (+) 669 WP_263837276.1 hypothetical protein -
  OFO16_RS10990 (OFO16_10990) - 2394246..2394635 (+) 390 WP_263837277.1 hypothetical protein -
  OFO16_RS10995 (OFO16_10995) - 2394652..2395053 (+) 402 WP_263837278.1 Hpt domain-containing protein -
  OFO16_RS11000 (OFO16_11000) - 2395362..2395502 (+) 141 Protein_2136 transposase family protein -
  OFO16_RS11005 (OFO16_11005) - 2395680..2395954 (+) 275 Protein_2137 transposase -
  OFO16_RS11010 (OFO16_11010) - 2396077..2396838 (-) 762 WP_263837163.1 IS5 family transposase -
  OFO16_RS11015 (OFO16_11015) - 2396927..2397961 (-) 1035 WP_263838726.1 IS110 family transposase -
  OFO16_RS11020 (OFO16_11020) - 2398029..2398913 (+) 885 Protein_2140 IS3 family transposase -
  OFO16_RS11025 (OFO16_11025) - 2398885..2399190 (-) 306 WP_263837279.1 transposase -
  OFO16_RS11030 (OFO16_11030) - 2399392..2399736 (-) 345 WP_263837280.1 helix-turn-helix domain-containing protein -
  OFO16_RS11035 (OFO16_11035) - 2399841..2400371 (+) 531 WP_263837281.1 hypothetical protein -
  OFO16_RS11040 (OFO16_11040) - 2400365..2401747 (+) 1383 WP_263837282.1 DEAD/DEAH box helicase -
  OFO16_RS11045 (OFO16_11045) - 2402441..2403445 (-) 1005 WP_263837283.1 Gfo/Idh/MocA family protein -
  OFO16_RS24160 - 2403887..2404030 (+) 144 Protein_2146 thioredoxin-dependent thiol peroxidase -

Sequence

Protein


Download         Length: 486 a.a.        Molecular weight: 54734.72 Da        Isoelectric Point: 5.9382

>NTDB_id=739267 OFO16_RS10950 WP_263837270.1 2385164..2386624(-) (luxO) [Vibrio natriegens strain PWH3a]
MKPKVLLIEDSTSLAILYKQYVQHEPYDLFHVETGKEAITFIERNVPQLVILDFRLPDMDGEQILDWINENQVPTSVVIA
TAHGSVDLAVNLVQKGAKDFLEKPINADRLKTSIALHLQQVKLENLVEDIENKFDRNRFHGFIGSSLPMQGVYKIIDSVA
PTTASVFIVGESGTGKEVCAEAIHRESKRKDKPFIAINCGAIPKDLMESEIFGHVRGAFTGATADRKGAASMANGGTLFL
DELCEMELEMQKKLLRFLQTGTFTPLGANKEMKVDIRIICATNRDPLVEVEEGRFREDLYYRVHVVPIDMPPLRERGNDI
TTLATHFLKLYAKEDGKKFNAIHRDAEPTLKRYAWPGNVRQLQNIIRNIVVLNDDSHLRLEHLPSQVTSSRAPKQNTVAK
PEPVITPQPVVINEAPENSHDAVSEPQIERPVAIRPMWQIEREAIQQAIDYCDGNVLNAAVLLELSPSTVYRKKQAWEAK
DEQQLV

Nucleotide


Download         Length: 1461 bp        

>NTDB_id=739267 OFO16_RS10950 WP_263837270.1 2385164..2386624(-) (luxO) [Vibrio natriegens strain PWH3a]
ATGAAACCAAAAGTACTACTAATCGAAGACTCAACTTCTCTTGCTATTTTGTACAAACAGTATGTACAGCACGAGCCCTA
TGACCTGTTTCATGTTGAAACGGGTAAAGAAGCCATCACCTTTATTGAAAGAAATGTTCCCCAATTGGTTATTCTGGACT
TTAGACTGCCCGACATGGATGGCGAGCAAATTCTGGATTGGATTAACGAGAACCAAGTCCCAACATCCGTCGTCATTGCC
ACGGCGCATGGCTCCGTAGATCTGGCGGTTAACCTTGTGCAAAAAGGAGCGAAAGACTTTCTCGAAAAACCAATCAATGC
TGATCGTCTAAAGACCTCCATCGCTCTGCACTTACAGCAAGTTAAACTGGAAAACCTTGTCGAAGACATAGAAAACAAAT
TCGATCGAAACCGATTCCACGGCTTCATCGGCTCTAGCCTTCCAATGCAAGGGGTGTACAAGATCATCGATTCAGTAGCG
CCAACGACAGCAAGTGTTTTTATTGTCGGTGAAAGTGGTACGGGTAAGGAAGTGTGCGCCGAAGCCATCCACCGCGAGAG
TAAGCGTAAAGATAAACCGTTTATCGCCATTAACTGTGGTGCGATACCAAAAGATCTCATGGAGAGTGAAATCTTTGGTC
ACGTCAGGGGCGCATTTACAGGCGCTACAGCCGATCGCAAAGGCGCAGCCTCAATGGCCAACGGTGGTACGCTTTTTCTT
GATGAGCTGTGTGAGATGGAACTTGAGATGCAAAAGAAATTACTCAGATTTTTGCAGACAGGTACCTTTACCCCACTAGG
CGCAAATAAAGAAATGAAAGTCGATATTCGTATCATCTGTGCGACGAATCGGGATCCTCTTGTTGAAGTAGAAGAAGGCC
GTTTCAGAGAAGATCTCTACTACCGCGTGCATGTAGTGCCTATTGATATGCCACCATTACGCGAGCGCGGCAATGATATT
ACGACTTTAGCGACTCACTTTCTTAAACTGTACGCTAAAGAAGATGGCAAAAAGTTTAACGCGATCCACCGAGATGCAGA
GCCAACGCTAAAACGCTACGCGTGGCCGGGTAACGTCCGTCAGCTTCAAAACATTATTCGCAATATCGTCGTCCTTAATG
ACGATAGCCATTTGCGCCTTGAGCATTTGCCATCTCAGGTCACATCAAGCCGTGCGCCAAAGCAAAACACCGTAGCTAAA
CCTGAGCCAGTCATCACTCCACAACCCGTCGTTATCAATGAGGCGCCAGAAAATAGTCACGACGCAGTTTCTGAGCCGCA
AATTGAAAGACCTGTAGCGATAAGGCCAATGTGGCAAATTGAACGTGAGGCAATACAGCAAGCCATTGATTACTGTGACG
GAAACGTGCTGAATGCGGCGGTACTTTTAGAGCTTAGCCCTTCTACGGTATATCGTAAGAAGCAAGCCTGGGAAGCTAAA
GATGAGCAACAACTCGTGTAA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(143-308)

Bacterial regulatory protein, Fis family (HTH_8)

(437-473)

Response regulator receiver domain (Response_reg)

(5-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

50.106

96.914

0.486