Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   OFO16_RS10040 Genome accession   NZ_CP107282
Coordinates   2188504..2189865 (-) Length   453 a.a.
NCBI ID   WP_263838722.1    Uniprot ID   -
Organism   Vibrio natriegens strain PWH3a     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2183504..2194865
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OFO16_RS10005 (OFO16_10005) moaE 2184063..2184518 (-) 456 WP_020335667.1 molybdopterin synthase catalytic subunit MoaE -
  OFO16_RS10010 (OFO16_10010) moaD 2184520..2184777 (-) 258 WP_020335669.1 molybdopterin synthase sulfur carrier subunit -
  OFO16_RS10015 (OFO16_10015) moaC 2184774..2185253 (-) 480 WP_014232530.1 cyclic pyranopterin monophosphate synthase MoaC -
  OFO16_RS10020 (OFO16_10020) moaB 2185280..2185792 (-) 513 WP_014232531.1 molybdenum cofactor biosynthesis protein B -
  OFO16_RS10025 (OFO16_10025) moaA 2185893..2186882 (-) 990 WP_263837164.1 GTP 3',8-cyclase MoaA -
  OFO16_RS10030 (OFO16_10030) - 2187189..2188085 (+) 897 WP_065302654.1 YvcK family protein -
  OFO16_RS10035 (OFO16_10035) luxU 2188163..2188507 (-) 345 WP_263837165.1 quorum-sensing phosphorelay protein LuxU -
  OFO16_RS10040 (OFO16_10040) luxO 2188504..2189865 (-) 1362 WP_263838722.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  OFO16_RS10045 (OFO16_10045) uvrB 2190196..2192226 (-) 2031 WP_263837166.1 excinuclease ABC subunit UvrB -
  OFO16_RS10055 (OFO16_10055) rsxA 2193331..2193909 (+) 579 WP_014232537.1 electron transport complex subunit RsxA -
  OFO16_RS10060 (OFO16_10060) rsxB 2193913..2194509 (+) 597 WP_014232538.1 electron transport complex subunit RsxB -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 50348.38 Da        Isoelectric Point: 6.0277

>NTDB_id=739266 OFO16_RS10040 WP_263838722.1 2188504..2189865(-) (luxO) [Vibrio natriegens strain PWH3a]
MVEDTASVAALYRSYLTPLGIDINIVGTGRDAIESLKHRIPDLILLDLRLPDMTGMDVLHAVKQSHPDVPIIFMTAHGSI
DTAVEAMRHGSQDFLIKPCEADRLRVTVNNAIRKATKLKNEADNPGNQNYQGFIGSSQTMQQVYRTIDSAASSKASIFIT
GESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAANDRQGAAELADGGTLFLDELCEMDLD
LQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRERGEDVVEIAYSLLG
YMSHEEGKGFVRFSQEVIDRFNNYEWPGNVRQLQNVLRNIVVLNHGKEITLDMLPPPLNQPLERKASSATVESQVMTASD
IVPLWITEKTAIERAIEACDGNIPRAAGYLDVSPSTIYRKLQAWNSKDERQKV

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=739266 OFO16_RS10040 WP_263838722.1 2188504..2189865(-) (luxO) [Vibrio natriegens strain PWH3a]
ATGGTCGAGGATACTGCGTCGGTTGCGGCGTTGTATCGCTCTTACCTGACGCCACTAGGTATTGACATCAATATTGTCGG
TACCGGGCGTGATGCGATCGAAAGCCTTAAACATCGTATCCCCGATCTTATTCTGCTTGATCTTCGTCTGCCTGACATGA
CGGGTATGGACGTTTTGCATGCAGTGAAACAAAGTCACCCAGACGTTCCTATCATCTTTATGACTGCACACGGCTCTATC
GATACTGCGGTAGAAGCGATGCGTCATGGCTCTCAAGACTTTTTGATTAAACCGTGTGAAGCCGACCGTTTACGTGTCAC
GGTGAACAATGCAATACGAAAAGCGACCAAGTTAAAAAACGAAGCGGATAATCCCGGAAACCAGAATTATCAGGGTTTCA
TCGGTAGTAGCCAAACCATGCAGCAGGTTTACCGTACCATTGACTCAGCTGCGAGCAGTAAGGCGAGTATTTTCATTACA
GGTGAAAGTGGCACGGGTAAAGAGGTGTGTGCCGAAGCTATCCATGCCGCAAGTAAACGAGGTGACAAACCTTTTATTGC
GATCAACTGTGCAGCGATCCCTAAAGATCTGATTGAAAGTGAGTTGTTTGGTCACGTAAAAGGCGCGTTCACTGGCGCGG
CAAATGATCGTCAAGGTGCGGCTGAATTAGCGGATGGCGGCACGCTTTTCCTCGATGAATTGTGTGAAATGGATTTGGAC
TTGCAGACCAAGTTGTTGCGATTTATCCAAACTGGTACCTTCCAGAAAGTCGGCTCATCAAAAATGAAGAGCGTGGATGT
GCGCTTTGTGTGTGCCACCAACCGTGACCCTTGGAAAGAGGTTCAGGAAGGGCGCTTTCGTGAAGACTTATATTACCGCT
TATACGTAATACCATTGCATCTTCCACCTTTGCGTGAGCGTGGCGAAGACGTTGTCGAAATTGCTTACTCTCTGTTGGGT
TATATGTCTCATGAAGAGGGAAAAGGTTTTGTACGCTTTTCGCAAGAAGTGATAGATCGATTCAATAACTATGAATGGCC
CGGCAACGTACGTCAGTTACAAAACGTGCTTCGCAATATTGTGGTGTTAAATCACGGTAAAGAAATTACTTTAGATATGC
TTCCGCCTCCATTGAATCAACCTTTGGAGCGTAAGGCATCAAGCGCCACAGTTGAGTCTCAAGTGATGACAGCATCAGAC
ATTGTGCCACTGTGGATTACGGAAAAAACGGCTATCGAACGCGCAATTGAAGCGTGCGACGGTAATATTCCTCGAGCGGC
AGGGTATCTAGATGTCAGTCCATCGACGATTTACCGTAAGCTACAAGCATGGAACAGTAAGGATGAGCGGCAAAAGGTAT
GA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(134-299)

Bacterial regulatory protein, Fis family (HTH_8)

(404-444)

Response regulator receiver domain (Response_reg)

(2-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

86.83

98.896

0.859