Detailed information NTG0739265

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QCG47_RS03180
• Genome accession: NZ_CP122319
• Coordinates: 669495..670487 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081588.1
• Uniprot ID: Q540P0
• Organism: Escherichia coli strain BW25113
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 664495..675487

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QCG47_RS03160 (QCG47_03160)	otnK	665271..666437 (+)	1167	WP_001393459.1	3-oxo-tetronate kinase	-
QCG47_RS03165 (QCG47_03165)	ygbL	666529..667167 (+)	639	WP_001278994.1	aldolase	-
QCG47_RS03170 (QCG47_03170)	ygbM	667172..667948 (+)	777	WP_001136934.1	HPr family phosphocarrier protein	-
QCG47_RS03175 (QCG47_03175)	ygbN	668037..669401 (+)	1365	WP_000104441.1	GntP family transporter	-
QCG47_RS03180 (QCG47_03180)	rpoS	669495..670487 (-)	993	WP_000081588.1	RNA polymerase sigma factor RpoS	Regulator
QCG47_RS03185 (QCG47_03185)	nlpD	670550..671644 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
QCG47_RS03190 (QCG47_03190)	pcm	671829..672455 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
QCG47_RS03195 (QCG47_03195)	surE	672449..673210 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
QCG47_RS03200 (QCG47_03200)	truD	673191..674240 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
QCG47_RS03205 (QCG47_03205)	ispF	674237..674716 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QCG47_RS03210 (QCG47_03210)	ispD	674716..675426 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37971.86 Da
• Isoelectric Point: 4.5886

>NTDB_id=739265 QCG47_RS03180 WP_000081588.1 669495..670487(-) (rpoS) [Escherichia coli strain BW25113]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=739265 QCG47_RS03180 WP_000081588.1 669495..670487(-) (rpoS) [Escherichia coli strain BW25113]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAACAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

• Sigma-70 region 3 (Sigma70_r3) (174-248)

3D structure

• AlphaFold DB: Q540P0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715