Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   OFO16_RS06710 Genome accession   NZ_CP107282
Coordinates   1455643..1457064 (-) Length   473 a.a.
NCBI ID   WP_263838528.1    Uniprot ID   -
Organism   Vibrio natriegens strain PWH3a     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1450643..1462064
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OFO16_RS06685 (OFO16_06685) - 1451239..1451889 (+) 651 WP_263838524.1 thiopurine S-methyltransferase -
  OFO16_RS06690 (OFO16_06690) purT 1451981..1453156 (-) 1176 WP_263838525.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  OFO16_RS06695 (OFO16_06695) cdd 1453304..1454191 (-) 888 WP_263838526.1 cytidine deaminase -
  OFO16_RS06700 (OFO16_06700) - 1454530..1455207 (-) 678 WP_263838527.1 CidB/LrgB family autolysis modulator -
  OFO16_RS06705 (OFO16_06705) - 1455209..1455583 (-) 375 WP_263838711.1 CidA/LrgA family protein -
  OFO16_RS06710 (OFO16_06710) sbcB 1455643..1457064 (-) 1422 WP_263838528.1 exodeoxyribonuclease I Machinery gene
  OFO16_RS06715 (OFO16_06715) - 1457251..1457697 (+) 447 Protein_1288 DUF3291 domain-containing protein -
  OFO16_RS06720 (OFO16_06720) - 1457973..1458425 (+) 453 WP_263838529.1 hypothetical protein -
  OFO16_RS06725 (OFO16_06725) - 1458733..1459353 (+) 621 WP_263838530.1 hypothetical protein -
  OFO16_RS06730 (OFO16_06730) - 1459540..1460013 (+) 474 WP_263838531.1 GNAT family N-acetyltransferase -
  OFO16_RS06735 (OFO16_06735) - 1460207..1461586 (-) 1380 WP_118118297.1 L-cystine transporter -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54500.63 Da        Isoelectric Point: 4.8214

>NTDB_id=739263 OFO16_RS06710 WP_263838528.1 1455643..1457064(-) (sbcB) [Vibrio natriegens strain PWH3a]
MHQDNQPTFFFFDYETWGTNPAKDRPSQFAGVRTDENFNIIGEPLVMYCQPPADYLPSPEAALITGITPQKAVQEGLPEP
EFIDKIHAELSKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVLRACHALRPEGVEWPENEDGFT
SFKLEHLSVKNGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFFSMRQKRKLNELVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSAEELHERLYTKREDLGDLLPVPVKLVHLNKCPILAPAKTLTAENAES
IGIDRQQCLNNLALLRQHPEIREKLISLFSVERAFEKSDDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARNFPGTLDEQEQRRWAQHCREVFESQIEEYMLNLENLVHEHESDEKKIGLLKSVYRYVESLAS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=739263 OFO16_RS06710 WP_263838528.1 1455643..1457064(-) (sbcB) [Vibrio natriegens strain PWH3a]
ATGCACCAAGATAATCAGCCCACTTTTTTCTTCTTTGACTACGAGACTTGGGGTACAAACCCTGCAAAAGATCGTCCGAG
TCAATTCGCTGGTGTTCGCACAGATGAAAATTTCAATATCATCGGCGAACCTTTAGTTATGTATTGCCAGCCACCTGCTG
ATTACCTTCCTTCTCCTGAAGCTGCCTTAATTACTGGTATTACCCCGCAAAAGGCTGTGCAAGAAGGTCTGCCTGAGCCT
GAGTTCATTGACAAAATTCATGCCGAGTTATCCAAACCAAATACCACCAGTTTGGGTTACAACAGTATTCGTTTTGATGA
TGAAGTCACGCGTTACACCTGTTACCGCAACTTTATAGATCCGTATGCGTGGAGTTGGCAGAACGGCAATTCGCGCTGGG
ATTTACTTGATGTGCTGCGCGCTTGTCATGCTCTTCGACCAGAAGGCGTTGAGTGGCCAGAAAACGAAGATGGGTTTACC
AGCTTCAAGTTAGAACACCTATCCGTTAAGAACGGTATTGAACACAGTAATGCACACGATGCCATGGCTGACGTTATCGC
AACGATCGAGATGGCGAAGAAAGTTAAAGCTGCTCAGCCTAAATTGTTTGATTACTTCTTCTCAATGCGTCAAAAACGTA
AGCTGAATGAATTGGTTGATATCGTTAATATGACGCCTTTGATGCACGTTTCTGGCATGTTAGGACGCGAGTGTCAGTAC
ACAAGCTGGATTGTGCCTGTTGCCTGGCATCCGACAAATAACAACGCAGTTATCACGATTGATTTAGCCAAAGATCCACA
ACCAATCCTAGAGCTGTCTGCAGAAGAGCTGCACGAAAGGTTGTACACCAAGCGAGAAGATCTCGGTGATTTGCTGCCTG
TGCCAGTTAAACTTGTTCACTTGAATAAGTGCCCAATTCTGGCACCAGCGAAAACGTTAACGGCTGAAAACGCGGAGTCT
ATCGGCATTGACCGTCAACAATGCTTGAACAATCTGGCTCTATTGCGTCAGCACCCAGAGATTCGAGAAAAGCTGATCAG
CCTGTTTTCTGTTGAGCGCGCATTTGAAAAAAGTGATGATGTGGATACTCAACTGTACGATGGCTTCTTCTCTCCGGCGG
ATCGCGCAGCGATGGACATTATTCGAGAGACTGACCCGAATAACCTGGCAGCTCTGGATATTGAATTCGATGACAAACGC
ATTAAACCGCTGTTGTTCCGTTACCGTGCTCGAAACTTCCCTGGTACGCTAGACGAACAGGAACAAAGACGTTGGGCACA
GCACTGCCGTGAAGTGTTTGAAAGCCAAATCGAAGAGTATATGCTGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAAATAGGACTATTAAAATCCGTATACCGTTATGTTGAGAGCCTAGCCTCTTAA

Domains

Predicted by InterproScan.

Exonuclease (RNase_T)

(11-190)

Exonuclease C-terminal (Exonuc_X-T_C)

(210-469)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

79.493

100

0.795