Detailed information NTG0073926

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: FOY54_RS02555
• Genome accession: NZ_AP019774
• Coordinates: 494827..495933 (+)
• Length: 368 a.a.
• NCBI ID: WP_176485116.1
• Uniprot ID: -
• Organism: Helicobacter suis strain SNTW101c
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 489827..500933

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FOY54_RS02520 (SNTW_05090)	-	490242..490628 (-)	387	WP_034375045.1	hypothetical protein	-
FOY54_RS02525 (SNTW_05100)	-	490621..490896 (-)	276	WP_034375042.1	DUF2018 family protein	-
FOY54_RS02530 (SNTW_05110)	-	490896..491336 (-)	441	WP_006564918.1	Dps family protein	-
FOY54_RS02535 (SNTW_05120)	-	491409..492383 (-)	975	WP_006564919.1	sensor histidine kinase	-
FOY54_RS02540 (SNTW_05130)	-	492452..492763 (-)	312	WP_006564920.1	hypothetical protein	-
FOY54_RS02545 (SNTW_05140)	-	492760..493797 (-)	1038	WP_040499354.1	flagellar basal body P-ring protein FlgI	-
FOY54_RS02550 (SNTW_05150)	comB9	493886..494830 (+)	945	WP_006564922.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
FOY54_RS02555 (SNTW_05160)	comB10	494827..495933 (+)	1107	WP_176485116.1	DNA type IV secretion system protein ComB10	Machinery gene
FOY54_RS02560 (SNTW_05170)	-	495986..496723 (+)	738	WP_006564924.1	(Fe-S)-binding protein	-
FOY54_RS02565 (SNTW_05180)	-	496720..498165 (+)	1446	WP_006564925.1	LutB/LldF family L-lactate oxidation iron-sulfur protein	-
FOY54_RS02570 (SNTW_05190)	-	498158..498802 (+)	645	WP_006564926.1	LutC/YkgG family protein	-
FOY54_RS02575 (SNTW_05200)	-	498811..499266 (+)	456	WP_034375034.1	peroxiredoxin	-
FOY54_RS02580 (SNTW_05210)	rfaE1	499460..500884 (-)	1425	WP_034375031.1	D-glycero-beta-D-manno-heptose-7-phosphate kinase	-

Sequence

Protein

• Length: 368 a.a.
• Molecular weight: 41169.58 Da
• Isoelectric Point: 7.4578

>NTDB_id=73926 FOY54_RS02555 WP_176485116.1 494827..495933(+) (comB10) [Helicobacter suis strain SNTW101c]
MNSLVKKLIIGLGMGVVIMASSLWWHKRNEQPEAVLEVEESNYPLSDYLFVPKQQQKEDPKDSEDYKRLEQILEENAKQI
TALKAQLKQASQKPPPQITPPPPQEIDSTQQDILASRIKAFEISQDEPKEQEPISVLDYGVDHFDNLKAKDVATHENRLL
RTITADKMIPAFLITPISSQLGGKVIAQVESDVFANMGRAILIPKGSKVIGYYNNNNKIGEYRLDIVWTRILTPQGVNIM
LTNAKGADVKGYSGLVGEMITHNFQRYGMPLLVSTISNGLLIALTSAIANKTGKNNFFGDYLLMQMTRQTGMGLNQIVAQ
ILRDKSNLKPIIIIREGSRVFIAPNLDIFFPVPKEGEILAQFFTHSLP

Nucleotide

• Length: 1107 bp

>NTDB_id=73926 FOY54_RS02555 WP_176485116.1 494827..495933(+) (comB10) [Helicobacter suis strain SNTW101c]
ATGAATTCTCTTGTTAAAAAGTTGATTATTGGATTGGGTATGGGTGTGGTGATCATGGCCTCTTCTCTTTGGTGGCATAA
AAGAAACGAACAACCGGAGGCCGTTTTAGAAGTAGAAGAATCTAACTATCCGCTTTCTGATTATTTATTTGTACCAAAAC
AACAACAAAAAGAAGATCCTAAGGATTCAGAGGATTACAAACGCCTAGAGCAAATATTAGAAGAAAATGCCAAGCAAATT
ACAGCTCTAAAGGCACAGCTTAAACAAGCATCACAAAAGCCACCGCCTCAAATAACCCCCCCGCCCCCACAAGAGATAGA
TAGCACGCAACAAGATATACTAGCCTCTCGTATTAAAGCCTTTGAAATTTCTCAAGATGAGCCTAAAGAGCAAGAACCAA
TTTCAGTACTAGACTATGGAGTTGATCATTTTGATAATCTCAAAGCTAAAGATGTGGCCACCCATGAAAATAGGCTTTTG
CGCACTATCACCGCTGATAAAATGATCCCCGCTTTTTTGATCACACCTATTAGCTCCCAGTTAGGCGGTAAGGTTATTGC
ACAGGTAGAAAGCGATGTATTTGCTAACATGGGACGGGCTATTTTAATCCCCAAGGGCTCTAAAGTTATAGGTTATTACA
ATAATAACAACAAAATAGGCGAGTACCGCCTTGATATTGTGTGGACTCGTATCCTCACGCCACAAGGGGTTAATATCATG
CTCACAAACGCCAAAGGCGCAGATGTTAAAGGCTATAGTGGACTAGTAGGTGAGATGATCACGCATAATTTCCAGCGCTA
TGGCATGCCTCTTTTAGTCTCTACCATTTCTAATGGCCTACTCATTGCGCTTACCTCAGCCATTGCCAATAAAACAGGTA
AAAATAATTTCTTTGGCGATTATCTTTTAATGCAAATGACGCGCCAAACGGGCATGGGATTAAACCAAATTGTAGCCCAG
ATTCTAAGAGATAAAAGCAATCTCAAGCCTATTATTATCATTAGAGAGGGGAGTAGAGTTTTTATCGCGCCTAATTTAGA
TATTTTTTTTCCTGTGCCTAAAGAGGGCGAGATATTAGCGCAGTTTTTTACCCATTCGTTGCCTTAG

Domains

Predicted by InterproScan.

• Bacterial conjugation TrbI-like protein (TrbI) (162-349)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	56.764	100	0.582