Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   OF848_RS15555 Genome accession   NZ_CP107276
Coordinates   3115665..3116615 (+) Length   316 a.a.
NCBI ID   WP_263931568.1    Uniprot ID   -
Organism   Heyndrickxia coagulans strain 150     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3110665..3121615
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OF848_RS15540 (OF848_15540) - 3111077..3112060 (+) 984 WP_029142516.1 homoserine dehydrogenase -
  OF848_RS15545 (OF848_15545) - 3112505..3113941 (+) 1437 WP_263931566.1 S41 family peptidase -
  OF848_RS15550 (OF848_15550) - 3114219..3115406 (+) 1188 WP_035180822.1 PDZ domain-containing protein -
  OF848_RS15555 (OF848_15555) ceuB 3115665..3116615 (+) 951 WP_263931568.1 ABC transporter permease Machinery gene
  OF848_RS15560 (OF848_15560) - 3116608..3117558 (+) 951 WP_029142521.1 iron chelate uptake ABC transporter family permease subunit -
  OF848_RS15565 (OF848_15565) - 3117552..3118310 (+) 759 WP_029142522.1 ABC transporter ATP-binding protein -
  OF848_RS15570 (OF848_15570) - 3118325..3119263 (+) 939 WP_035176375.1 siderophore ABC transporter substrate-binding protein -
  OF848_RS15575 (OF848_15575) - 3119320..3119556 (-) 237 WP_026104642.1 4Fe-4S binding protein -
  OF848_RS15580 (OF848_15580) - 3119987..3121402 (-) 1416 WP_042512470.1 ISLre2 family transposase -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34370.47 Da        Isoelectric Point: 10.0288

>NTDB_id=739216 OF848_RS15555 WP_263931568.1 3115665..3116615(+) (ceuB) [Heyndrickxia coagulans strain 150]
MKKRYLVPLLAVLSIISIFIGAENIRPADMLHLSKEQTEILLASRLPRLISIIIAGMGMSICGLVMQQLTRNKFVSPTTA
GTMDCARLGILVAIILFSAASPLIKIAVAFCFALAGTLLFMKILGRIKWNDTIFIPLVGLMFGNIVSSVSTFFAYKHDLV
QSLSSWLQGDFSGVLKGKYEMLYLAVPAVLVAYVFANRFTVAGMGEDFAKNLGLNYKQVINIGLALVALITSATVLTVGT
IPFLGLIIPNIVSIYRGDHMKKSITVTALLGAVFLLFCDILGRLVIYPYEVPISLTAGIIGSGIFVYLLLRRHAYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=739216 OF848_RS15555 WP_263931568.1 3115665..3116615(+) (ceuB) [Heyndrickxia coagulans strain 150]
ATGAAAAAAAGATATTTAGTGCCCCTGCTTGCCGTCCTGTCCATCATTTCAATTTTCATCGGCGCAGAAAATATCAGACC
GGCGGATATGCTCCATTTAAGCAAGGAGCAGACGGAAATTTTGCTGGCAAGCCGCCTGCCGCGCCTGATCAGCATTATCA
TTGCGGGCATGGGCATGAGCATCTGCGGCCTTGTGATGCAGCAGCTGACGAGAAATAAATTTGTCTCCCCGACGACAGCC
GGCACGATGGACTGTGCCCGGCTCGGCATTTTGGTTGCGATCATCCTGTTTTCTGCGGCAAGCCCGCTGATCAAAATTGC
GGTTGCCTTTTGCTTTGCCCTGGCCGGCACCTTGCTGTTCATGAAAATACTGGGCCGGATTAAATGGAACGATACAATTT
TCATCCCGCTTGTCGGGCTGATGTTTGGCAATATCGTAAGTTCTGTATCTACTTTTTTTGCGTATAAACACGACTTAGTC
CAGAGCCTTTCTTCATGGCTGCAAGGCGATTTTTCAGGCGTACTGAAAGGGAAGTACGAGATGCTTTATTTAGCAGTTCC
GGCCGTTTTGGTCGCGTATGTGTTTGCCAACCGGTTTACGGTCGCCGGCATGGGGGAAGATTTTGCCAAAAATCTTGGCT
TGAATTACAAGCAGGTGATCAATATCGGCCTTGCCCTTGTCGCGCTGATTACTTCGGCAACGGTACTGACAGTCGGCACC
ATCCCGTTTCTGGGCTTAATTATTCCAAACATTGTGTCCATTTATCGCGGCGACCATATGAAAAAAAGCATTACGGTGAC
GGCGCTGCTTGGGGCAGTGTTCCTGCTGTTTTGCGATATTTTGGGGCGTCTTGTCATTTATCCATATGAAGTGCCGATCA
GTTTAACAGCCGGCATCATCGGGAGTGGCATTTTTGTATATTTGCTGCTGAGGAGGCACGCTTATGCATAG

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

51.757

99.051

0.513