Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   OF848_RS07350 Genome accession   NZ_CP107276
Coordinates   1423615..1424409 (-) Length   264 a.a.
NCBI ID   WP_263932358.1    Uniprot ID   -
Organism   Heyndrickxia coagulans strain 150     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 1418615..1429409
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OF848_RS07325 (OF848_07325) - 1418633..1420090 (+) 1458 WP_029141640.1 glutamate synthase subunit beta -
  OF848_RS07330 (OF848_07330) mutY 1420709..1421801 (-) 1093 Protein_1414 A/G-specific adenine glycosylase -
  OF848_RS07335 (OF848_07335) - 1421981..1422961 (+) 981 WP_029141641.1 metal-dependent hydrolase -
  OF848_RS07340 (OF848_07340) - 1423046..1423204 (+) 159 WP_029141642.1 small, acid-soluble spore protein K -
  OF848_RS07345 (OF848_07345) - 1423295..1423612 (-) 318 WP_029141643.1 YfhH family protein -
  OF848_RS07350 (OF848_07350) recX 1423615..1424409 (-) 795 WP_263932358.1 recombination regulator RecX Regulator
  OF848_RS07355 (OF848_07355) - 1424497..1424619 (+) 123 WP_263932359.1 YfhE family protein -
  OF848_RS07360 (OF848_07360) - 1424700..1424882 (+) 183 WP_017552868.1 YfhD family protein -
  OF848_RS07365 (OF848_07365) trpA 1425130..1425921 (-) 792 WP_029141645.1 tryptophan synthase subunit alpha -
  OF848_RS07370 (OF848_07370) - 1425914..1426057 (-) 144 WP_019721536.1 hypothetical protein -
  OF848_RS07375 (OF848_07375) trpB 1426050..1427255 (-) 1206 WP_263932360.1 tryptophan synthase subunit beta -
  OF848_RS07380 (OF848_07380) trpCF 1427233..1428657 (-) 1425 WP_263932361.1 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 30878.63 Da        Isoelectric Point: 9.3837

>NTDB_id=739200 OF848_RS07350 WP_263932358.1 1423615..1424409(-) (recX) [Heyndrickxia coagulans strain 150]
MPVITKISLQKNNKERYNIFLDGKYRFSVDEEVLARYQLLKGKELDELDIEAILAEDDIRKGVNTAIRFLSYRMRSEKEV
REDLIKKEFAPEVVRSVISKLYEMQYLDDAEFAASFVRTQMNTTHKGPVVINRELQQKGIAPEMIEKALEIFDADQQVEH
ARALAEKLSRQHARLSEKLLKQKVKQGLTVKGYPPEVISAAMAALHVEKDEETEWKALLQHAEKAKRKYGKFSGYVYRQK
MKQFLYRKGFPMDLIERYLREEGD

Nucleotide


Download         Length: 795 bp        

>NTDB_id=739200 OF848_RS07350 WP_263932358.1 1423615..1424409(-) (recX) [Heyndrickxia coagulans strain 150]
GTGCCTGTCATTACAAAAATTTCGCTTCAAAAAAACAATAAAGAACGATACAATATTTTTCTTGACGGAAAGTACCGGTT
CAGTGTTGATGAAGAAGTGCTGGCACGGTACCAGCTTTTAAAAGGGAAAGAATTGGATGAGCTTGATATTGAAGCGATCC
TTGCCGAGGATGATATCCGGAAAGGCGTCAATACCGCCATCCGTTTTCTTTCCTACCGGATGCGGTCGGAAAAAGAAGTG
CGTGAGGATTTGATAAAAAAGGAATTTGCGCCGGAAGTCGTCCGGAGTGTCATATCAAAGCTTTATGAAATGCAGTATCT
TGATGATGCGGAATTTGCCGCAAGTTTCGTGCGGACACAAATGAATACAACGCATAAAGGGCCTGTTGTCATTAACAGGG
AACTTCAGCAAAAAGGCATTGCACCAGAGATGATCGAAAAAGCGCTTGAAATTTTTGATGCTGATCAGCAAGTGGAACAT
GCCCGTGCCCTTGCAGAAAAACTTTCCAGGCAGCATGCCCGGTTGTCGGAGAAGCTTTTAAAGCAAAAAGTGAAGCAGGG
GCTTACAGTAAAAGGCTATCCGCCTGAAGTGATTTCCGCTGCGATGGCGGCGCTTCATGTTGAAAAGGATGAAGAAACGG
AATGGAAAGCACTTCTTCAGCATGCCGAAAAAGCAAAGCGCAAATACGGAAAGTTTTCGGGATATGTATACAGGCAAAAA
ATGAAGCAGTTTTTATACCGGAAAGGGTTCCCGATGGATTTGATAGAGCGCTATTTGCGGGAAGAGGGGGATTAA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

52.29

99.242

0.519