Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   PALA22_RS07815 Genome accession   NZ_CP107275
Coordinates   1694664..1695221 (-) Length   185 a.a.
NCBI ID   WP_023119823.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PALA22     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1689664..1700221
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PALA22_RS07800 (PALA22_01550) pilY1 1689756..1693247 (-) 3492 WP_003102607.1 type 4a pilus biogenesis protein PilY1 -
  PALA22_RS07805 (PALA22_01551) pilX 1693259..1693846 (-) 588 WP_003102605.1 type 4a pilus minor pilin PilX -
  PALA22_RS07810 (PALA22_01552) pilW 1693843..1694667 (-) 825 WP_023114841.1 type 4a pilus minor pilin PilW -
  PALA22_RS07815 (PALA22_01553) pilV 1694664..1695221 (-) 558 WP_023119823.1 type 4a pilus minor pilin PilV Machinery gene
  PALA22_RS07820 (PALA22_01554) - 1695212..1695718 (-) 507 WP_003102598.1 GspH/FimT family pseudopilin -
  PALA22_RS07825 (PALA22_01555) - 1695824..1696333 (-) 510 WP_003161431.1 GspH/FimT family pseudopilin -
  PALA22_RS07830 (PALA22_01556) thiO 1696468..1697562 (+) 1095 WP_003119424.1 glycine oxidase ThiO -
  PALA22_RS07835 (PALA22_01557) pilR 1697608..1698945 (-) 1338 WP_003094694.1 two-component system response regulator PilR Regulator

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20088.18 Da        Isoelectric Point: 8.2255

>NTDB_id=739159 PALA22_RS07815 WP_023119823.1 1694664..1695221(-) (pilV) [Pseudomonas aeruginosa strain PALA22]
MLLKSRHRSLHQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGNNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=739159 PALA22_RS07815 WP_023119823.1 1694664..1695221(-) (pilV) [Pseudomonas aeruginosa strain PALA22]
ATGCTATTGAAATCGCGACACAGGTCGCTGCACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAACAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCAAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTTGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

98.919

100

0.989