Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   OHM01_RS00485 Genome accession   NZ_CP107274
Coordinates   105452..106000 (-) Length   182 a.a.
NCBI ID   WP_263936410.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 1145734     
Function   pseudopilus extrusion and retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 100452..111000
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHM01_RS00475 (OHM01_00475) - 101458..101970 (-) 513 WP_003687349.1 shikimate kinase -
  OHM01_RS00480 (OHM01_00480) pilQ 103238..105433 (-) 2196 WP_003687350.1 type IV pilus secretin PilQ Machinery gene
  OHM01_RS00485 (OHM01_00485) pilP 105452..106000 (-) 549 WP_263936410.1 pilus assembly protein PilP Machinery gene
  OHM01_RS00490 (OHM01_00490) - 106018..106665 (-) 648 WP_003690570.1 type 4a pilus biogenesis protein PilO -
  OHM01_RS00495 (OHM01_00495) pilN 106666..107265 (-) 600 WP_003700890.1 PilN domain-containing protein Machinery gene
  OHM01_RS00500 (OHM01_00500) pilM 107268..108383 (-) 1116 WP_003687356.1 type IV pilus biogenesis protein PilM -
  OHM01_RS00505 (OHM01_00505) - 108535..110931 (+) 2397 WP_003690571.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20180.76 Da        Isoelectric Point: 4.7529

>NTDB_id=739105 OHM01_RS00485 WP_263936410.1 105452..106000(-) (pilP) [Neisseria gonorrhoeae strain 1145734]
MKHYALLIISFLALSACSQSSEDLNEWMAQTRREAKAEIIPFQAPTLPVAPVYSPPQLTGPNAFDFRRMETAKKGENAPD
TKRIKETLEKFSLENMRYVGILKSGQKVSGFIEAEGYVYTVGVGNYLGQNYGRIESITDDSIILNELIEDSTGNWVSRKA
ELLLNSSDKNTEQAAAPAAEQN

Nucleotide


Download         Length: 549 bp        

>NTDB_id=739105 OHM01_RS00485 WP_263936410.1 105452..106000(-) (pilP) [Neisseria gonorrhoeae strain 1145734]
ATGAAACACTATGCCTTACTCATCATCAGCTTTCTGGCTCTCTCCGCGTGTTCCCAAAGTTCTGAAGACCTAAACGAATG
GATGGCACAAACGCGACGCGAAGCCAAAGCAGAAATCATACCTTTCCAAGCACCTACCCTGCCGGTTGCGCCGGTATACA
GCCCGCCGCAGCTTACAGGGCCGAACGCATTCGACTTCCGCCGCATGGAAACCGCCAAAAAAGGGGAAAATGCCCCCGAC
ACCAAGCGTATTAAAGAAACGCTGGAAAAATTCAGTTTGGAAAATATGCGTTATGTCGGCATTTTGAAGTCCGGACAGAA
AGTCTCCGGCTTCATCGAGGCTGAAGGTTATGTCTACACTGTCGGTGTCGGCAACTATTTGGGACAAAACTACGGTAGAA
TCGAAAGCATTACCGACGACAGCATCATCCTGAACGAGCTGATAGAAGACAGCACGGGCAACTGGGTTTCCCGTAAAGCA
GAACTGCTGTTGAATTCTTCCGACAAAAACACCGAACAAGCGGCAGCACCTGCCGCAGAACAAAATTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(23-164)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Neisseria meningitidis MC58

97.802

100

0.978