Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   OHM05_RS00270 Genome accession   NZ_CP107272
Coordinates   52687..55839 (-) Length   1050 a.a.
NCBI ID   WP_263946606.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 1130991     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 47687..60839
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHM05_RS00245 (OHM05_00245) - 47827..48390 (-) 564 WP_002214615.1 ComF family protein -
  OHM05_RS11920 - 48950..49323 (+) 374 Protein_48 hypothetical protein -
  OHM05_RS00250 (OHM05_00250) - 49571..49960 (-) 390 WP_003687278.1 endonuclease domain-containing protein -
  OHM05_RS00260 (OHM05_00260) - 50123..50502 (-) 380 Protein_50 VOC family protein -
  OHM05_RS00265 (OHM05_00265) carA 50556..51689 (-) 1134 WP_025455926.1 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit -
  OHM05_RS00270 (OHM05_00270) pilC 52687..55839 (-) 3153 WP_263946606.1 PilC family type IV pilus tip adhesin Machinery gene
  OHM05_RS00275 (OHM05_00275) apbC 56672..57751 (-) 1080 WP_047918702.1 iron-sulfur cluster carrier protein ApbC -
  OHM05_RS00285 (OHM05_00285) - 58125..58634 (+) 510 WP_003687293.1 protein disulfide oxidoreductase -
  OHM05_RS00290 (OHM05_00290) nadR 58975..59415 (+) 441 WP_003694725.1 MarR family adhesin repressor NadR -
  OHM05_RS00295 (OHM05_00295) hpaC 59530..60030 (+) 501 WP_003687298.1 4-hydroxyphenylacetate 3-monooxygenase, reductase component -
  OHM05_RS00300 (OHM05_00300) murU 60046..60741 (+) 696 WP_003687300.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU -

Sequence

Protein


Download         Length: 1050 a.a.        Molecular weight: 115612.96 Da        Isoelectric Point: 9.7940

>NTDB_id=739055 OHM05_RS00270 WP_263946606.1 52687..55839(-) (pilC) [Neisseria gonorrhoeae strain 1130991]
MNKTLKRRVFRHTALYTAILMFSHTGGGGGAMAQTHQYAIIMNERKQPEVKWKDQYNQSALKDKSRERTFSHTSQKNGLG
ITSNFISFNNNDELVSQQSGTAVFGTATYLPPYGKVSGFDTAELNKRGNAVNWIHTTRPGLAGYGYTGIRCGSTKDCPKL
TYKTRFSFDNPDLLKTRGGLDRHTEPSRENSPIYKLKDYPWLGVSFNLGGEGTAKDGRSSSKLVSSFDENNSNSNQNLVY
TTEGHRIFLSNWQQETTAMAYYLNAKLHLLDKKKIEDITGKTVQLGVLKPSIDVKTQNTGLSGILNFWSKWDIKDNGQIP
VKLGLPEVKAGRCINEPNPNKNTQAPSPALTAPALWFGSVQNGKVQMYSASVSTYPGSSSSRIFLQELKTRTDPARPGRH
SLAALDTQNIKSREPNFNSRQTVIRLPGGVYRIAPTRDRIVGLNGNDGKNDTFGIYKDRLVTPEVDEWAKVLLPWTVRYY
GNDDIFKTFNQPNNKKQSDKKQYSQKYRIRTKEDDNDKPRDLGDIVNSPITAVGGYLATSANDGMVHIFKKTGTDQRGYE
LKLSYIPGTMERKDIEGNDSDLAKELRAFAEQGYVGDRYGVDGGFVLRRITDDQDRQKHFFMFGAMGLGGRGAYALDLTK
IDSNPVGVSMFDVQNDKNNNKNDSNRVKLGYTVGTPQIGKTQNGKYAAFLASGYAAKDIVSSDNTTALYVYDLKDTLGTP
IAKIEAPGGKGGLSSPTLVDKDLDGTVDIAYAGDRGGNMYRFDLSSDKPSEWAVRTIFEGTKPITSAPAVSRLADKRVVI
FGTGSDLTEEDVLNTDEQYIYGIFDDDKAANNVNASRGVLGSGLLEQHLTQENKTLFLNKRSDGSGSKGWAVKLTGGRRV
TVKPTVVLRTAFVTIRKYTGNDKCGAETAILGINTADGGALTPRSARPIVPEANKDVAQYSGHKKTADGKSVPIGCMWKN
GKTVCPNGYVYDKPVNVRYLDEKKTDDFPVTADGDAGGSGTFKEGKKPARNNRCFSGKGVRTLLMNDLDSLDITGPMCGI
KRLSWREVFF

Nucleotide


Download         Length: 3153 bp        

>NTDB_id=739055 OHM05_RS00270 WP_263946606.1 52687..55839(-) (pilC) [Neisseria gonorrhoeae strain 1130991]
ATGAATAAAACTTTAAAAAGGCGGGTTTTCCGCCATACCGCGCTTTATACCGCCATCTTGATGTTTTCCCATACCGGCGG
GGGGGGGGGGGCGATGGCGCAAACCCATCAATACGCTATTATCATGAACGAGCGAAAGCAGCCCGAGGTAAAGTGGAAGG
ATCAATATAATCAATCAGCATTAAAGGACAAAAGCAGGGAGCGGACATTTAGCCATACGAGCCAGAAAAACGGCCTCGGC
ATCACAAGCAATTTTATCTCATTCAACAATAACGATGAGCTTGTTTCTCAACAAAGCGGTACTGCCGTTTTTGGCACAGC
CACCTACCTGCCGCCCTACGGCAAGGTTTCCGGCTTTGATACCGCCGAGCTGAACAAGCGCGGCAATGCCGTCAATTGGA
TTCATACCACCCGGCCCGGGCTGGCAGGCTACGGCTACACCGGTATCCGTTGCGGAAGTACCAAAGACTGTCCCAAACTT
ACCTATAAAACCCGATTTTCCTTCGATAATCCCGACTTGCTAAAAACAAGAGGCGGGCTGGATAGGCACACAGAGCCAAG
CCGCGAAAATTCGCCCATTTACAAATTGAAGGATTATCCATGGTTGGGTGTGTCTTTCAATTTGGGCGGCGAGGGTACCG
CCAAAGATGGCAGATCATCCAGCAAATTGGTATCTTCTTTTGATGAAAACAATAGTAATAGTAATCAAAACCTCGTCTAT
ACGACAGAAGGCCACCGTATTTTCCTTAGCAACTGGCAGCAAGAAACGACCGCCATGGCCTATTATCTGAACGCCAAGCT
GCACCTGCTGGACAAAAAAAAGATTGAAGATATCACCGGCAAAACAGTGCAGTTGGGTGTCTTGAAGCCGAGCATCGATG
TGAAGACACAAAATACGGGGCTTAGCGGCATTCTAAATTTTTGGTCTAAGTGGGACATTAAAGATAACGGGCAGATTCCG
GTCAAGCTCGGCCTGCCGGAAGTCAAAGCAGGCCGCTGCATCAACGAACCGAACCCCAATAAGAATACCCAAGCCCCTTC
GCCGGCACTGACCGCCCCCGCGCTGTGGTTCGGCTCTGTGCAAAATGGTAAGGTGCAGATGTATTCCGCTTCGGTTTCCA
CCTACCCCGGCAGTTCGAGCAGCCGCATCTTCCTCCAAGAGCTGAAAACTCGAACCGACCCCGCCCGGCCCGGCCGGCAT
TCCCTCGCCGCTTTGGATACGCAGAACATCAAAAGCCGCGAGCCGAATTTCAACTCAAGGCAGACCGTGATCCGATTGCC
GGGCGGCGTGTACCGGATCGCCCCGACTCGCGACAGGATCGTGGGTTTGAATGGCAATGACGGCAAAAACGACACTTTCG
GCATCTACAAGGACAGGCTCGTCACACCTGAGGTCGACGAGTGGGCAAAAGTGCTGCTGCCTTGGACGGTCCGGTATTAC
GGTAATGACGATATATTTAAAACATTCAACCAACCAAACAACAAAAAACAAAGCGACAAAAAACAATACAGCCAAAAATA
CCGCATCCGCACAAAAGAAGATGACAATGACAAACCCCGCGATTTGGGCGACATCGTCAACAGCCCGATAACGGCGGTCG
GCGGGTATCTGGCAACTTCTGCCAACGACGGGATGGTGCATATCTTCAAAAAAACCGGCACAGACCAACGAGGCTACGAA
CTGAAGCTCAGCTACATCCCCGGTACGATGGAGCGTAAGGATATTGAAGGCAATGACTCCGACCTCGCCAAAGAGCTGCG
CGCCTTTGCCGAACAAGGCTATGTGGGCGACCGCTACGGCGTGGACGGCGGCTTTGTCTTGCGCCGCATTACAGATGACC
AAGACAGGCAAAAACATTTCTTTATGTTTGGTGCGATGGGCCTGGGCGGCAGAGGCGCATACGCCTTGGATTTGACCAAA
ATCGACAGCAACCCGGTCGGCGTTTCCATGTTTGATGTCCAAAACGACAAAAATAACAATAAGAATGACAGTAATCGCGT
GAAATTAGGCTACACCGTCGGTACGCCGCAAATCGGCAAAACCCAAAACGGCAAATACGCCGCCTTCCTCGCCTCCGGTT
ATGCGGCTAAAGATATTGTCAGCAGCGATAATACAACCGCGCTGTATGTGTATGATTTGAAAGACACCTTAGGTACGCCG
ATTGCAAAAATCGAAGCACCCGGCGGCAAAGGCGGGCTTTCGTCCCCCACGCTGGTGGATAAAGATTTGGACGGCACGGT
CGATATCGCCTATGCCGGCGATCGGGGCGGGAATATGTACCGCTTTGATTTGAGCAGCGACAAGCCGTCCGAGTGGGCTG
TACGCACTATTTTCGAAGGCACAAAACCGATTACTTCCGCGCCCGCCGTTTCCCGACTGGCAGACAAACGCGTGGTTATC
TTCGGCACGGGCAGCGATTTGACCGAAGAAGATGTACTGAATACGGACGAACAATATATTTACGGCATCTTCGACGACGA
TAAGGCGGCGAATAATGTAAATGCAAGCCGCGGCGTTTTGGGGAGCGGGCTGCTCGAGCAACACCTTACTCAGGAAAATA
AAACATTATTCCTGAACAAGAGATCCGACGGTTCGGGCAGCAAGGGCTGGGCGGTGAAATTGACAGGCGGACGGCGCGTT
ACCGTCAAACCGACCGTGGTATTGCGTACCGCCTTCGTAACCATCCGGAAATATACGGGTAATGACAAATGCGGCGCGGA
AACCGCCATTTTGGGCATCAATACCGCCGACGGCGGCGCATTGACTCCGAGAAGCGCGCGCCCGATTGTGCCGGAAGCCA
ATAAGGATGTCGCACAATATTCCGGCCATAAGAAAACCGCCGACGGCAAATCCGTCCCTATAGGCTGCATGTGGAAAAAC
GGCAAAACCGTCTGCCCGAACGGATATGTTTACGACAAGCCGGTTAATGTGCGCTACCTGGACGAAAAGAAAACAGACGA
TTTCCCCGTCACGGCAGACGGTGATGCAGGCGGCAGCGGAACATTCAAAGAGGGTAAAAAACCCGCCCGCAATAACCGGT
GCTTCTCCGGAAAAGGTGTGCGCACCCTGCTGATGAACGATTTGGACAGCTTGGATATTACCGGCCCGATGTGCGGTATC
AAACGCTTAAGCTGGCGCGAAGTCTTCTTCTGA

Domains

Predicted by InterproScan.

Neisseria PilC beta-propeller domain (T4P_PilY1)

(522-859)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Neisseria meningitidis A1493

69.934

100

0.707