Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   OHM03_RS10270 Genome accession   NZ_CP107271
Coordinates   1951053..1954154 (-) Length   1033 a.a.
NCBI ID   WP_263955076.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 1123850     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1946053..1959154
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHM03_RS10255 (OHM03_10255) - 1946144..1947370 (+) 1227 WP_003697786.1 PilT/PilU family type 4a pilus ATPase -
  OHM03_RS10260 (OHM03_10260) yccS 1947487..1949637 (+) 2151 WP_003697785.1 YccS family putative transporter -
  OHM03_RS10265 (OHM03_10265) - 1950117..1950401 (-) 285 WP_003692093.1 GIY-YIG nuclease family protein -
  OHM03_RS10270 (OHM03_10270) pilC 1951053..1954154 (-) 3102 WP_263955076.1 PilC family type IV pilus tip adhesin Machinery gene
  OHM03_RS10275 (OHM03_10275) - 1954997..1955260 (+) 264 WP_017147189.1 hypothetical protein -
  OHM03_RS10280 (OHM03_10280) gnd 1955340..1956788 (+) 1449 WP_047918023.1 decarboxylating NADP(+)-dependent phosphogluconate dehydrogenase -
  OHM03_RS10285 (OHM03_10285) waaA 1956851..1958122 (+) 1272 WP_025455875.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  OHM03_RS10290 (OHM03_10290) - 1958163..1958612 (+) 450 WP_003688065.1 CopD family copper resistance protein -

Sequence

Protein


Download         Length: 1033 a.a.        Molecular weight: 113525.96 Da        Isoelectric Point: 9.8159

>NTDB_id=739048 OHM03_RS10270 WP_263955076.1 1951053..1954154(-) (pilC) [Neisseria gonorrhoeae strain 1123850]
MNKTLKRQVFRHTALYAAILMFSHTGGGGAMAQTHKYAIIMNERKQPEVKRNGQYSTIKDKDRERVFDYTSQKDTLGRTN
NFISFNNNDTLVSQQSGTAVFGTATYLPPYGKVSGFDADALKGRANAVDWIRTTRPGLAGYAYTNVICRSNKCPQLVYKT
QFTFGQQGLQRKDSKLDIYEDKSRENSPIYKLKDYPWLGVSFNLGSEGTAKDGRVTNKLVSSFDENNSNQNLVYTTEGHN
ISLGNWQRESTVMAYYLNAKLHLLDKKKIENIAPGKTVDLGTLRPRVETTGRSWLDFWATWKIEDKGNITVRLGLPEVKA
GRCINKPNPNPKSALSPALTAPALWFGPVQNGKVQMYSASVSTYPDSSSSRIFLQELKTQTEPGKPGRYSLKPLSENEIK
SKEPRFNGRQTVIRLDSGIQLIKLNGSKDEVVTFGNTGNNGTFGIVKEANVNLEADEWKKVLLPWTVRGPDNDNKFKSIN
REPGKYSQRYRIRDNNGNRDLGDIVNSPIVAVGGYLATAANDGMVHIFKKNGGSDERSYNLKLSYIPGTVPRQYFDNDTF
ALKDSTLAQELRTFAEKGYVGDRYGVDGGFVLRQVNLNGQDRVFMFGAMGLGGRGAYALDLSKINGNYPAAAPLFDVKNG
DKNGKNGKNRVEVELGYTVGTPQIGKTQNGKYAAFLASGYAAKQIASQENKTALYVYDLGNGSGSLIKKIEVQGGKGGLS
SPTLVDKDLDGIVDIAYAGDRGGNMYRFDLSSDKPSEWTVRTIFEGGKPITSAPAVSRLADKRVVIFGTGSDLSEEDVLN
TDEQYIYGIFDDDEGTVNVKVTNGTGGGLLEQNLTQENKTLFLTNNKASGGSNGKGWVVKLRQGERVTVKPTVVLRTAFV
TIRKYKDDGCGAETAILGINTADGGALTPRSARPIVPDNQVAQYSGHQKMNGKSIPIGCMWKNGKTVCPNGYVYDKPVNV
RYLDEKKTDDFPVTADGDAGGSGTFKEGKKPARNNRCFSGKGVRTLLMNDLDSLDITGPMCGIKRLSWREVFF

Nucleotide


Download         Length: 3102 bp        

>NTDB_id=739048 OHM03_RS10270 WP_263955076.1 1951053..1954154(-) (pilC) [Neisseria gonorrhoeae strain 1123850]
ATGAATAAAACTTTGAAACGGCAGGTTTTCCGCCATACCGCGCTTTATGCCGCCATCTTGATGTTTTCCCATACCGGCGG
GGGGGGGGCGATGGCGCAAACCCATAAATACGCTATTATCATGAACGAGCGAAAGCAGCCCGAGGTAAAGCGGAATGGGC
AATATTCAACAATAAAGGACAAAGACAGGGAGCGGGTATTTGACTATACGAGCCAGAAAGACACCCTCGGCAGGACAAAC
AATTTTATCTCATTCAACAATAACGATACCCTTGTTTCTCAACAAAGCGGTACTGCCGTTTTTGGCACAGCCACCTACCT
GCCGCCCTACGGCAAGGTTTCCGGTTTTGATGCCGACGCTCTGAAAGGGCGCGCCAATGCCGTCGATTGGATTCGTACCA
CCCGGCCCGGGCTGGCAGGCTACGCCTACACCAACGTCATATGCAGAAGCAACAAATGCCCCCAACTTGTCTATAAAACC
CAATTTACCTTCGGTCAACAAGGGTTGCAAAGAAAGGACAGCAAGCTGGATATATACGAAGACAAAAGCCGCGAAAATTC
GCCCATTTACAAATTGAAGGATTATCCATGGTTGGGCGTGTCTTTCAATTTGGGCAGCGAGGGTACCGCCAAAGATGGTA
GGGTAACCAACAAATTGGTATCTTCTTTTGATGAAAACAATAGTAATCAAAACCTCGTCTATACCACGGAAGGCCACAAT
ATTTCCTTGGGCAACTGGCAGCGCGAAAGTACCGTCATGGCCTATTATCTGAACGCCAAACTGCACCTGCTGGATAAAAA
AAAGATTGAAAATATCGCGCCAGGCAAAACAGTGGATTTGGGCACCTTGAGACCGCGCGTCGAGACGACAGGACGAAGCT
GGCTAGATTTTTGGGCTACGTGGAAGATTGAAGATAAAGGGAACATTACAGTCCGCCTCGGCCTGCCGGAAGTCAAAGCA
GGCCGCTGCATCAACAAACCGAACCCCAATCCCAAATCAGCCCTTTCGCCGGCACTGACCGCCCCCGCGCTGTGGTTCGG
TCCTGTGCAAAATGGCAAGGTGCAGATGTATTCCGCTTCGGTTTCCACCTACCCCGACAGTTCGAGCAGCCGCATCTTCC
TCCAAGAGCTGAAAACTCAAACCGAACCCGGCAAACCCGGCCGCTATTCCCTCAAACCCTTGAGTGAGAATGAGATTAAA
AGTAAAGAGCCGCGTTTCAACGGAAGGCAGACCGTCATCCGATTGGATAGCGGCATACAGCTGATCAAACTGAATGGAAG
CAAGGATGAGGTCGTCACTTTTGGAAACACCGGCAACAACGGCACTTTCGGCATTGTTAAGGAAGCGAACGTCAATCTTG
AAGCCGACGAGTGGAAAAAAGTGCTGCTGCCTTGGACGGTTCGGGGTCCCGATAATGACAATAAATTTAAATCAATTAAC
CGAGAACCAGGCAAATACAGCCAAAGATACCGCATCCGCGACAACAACGGCAATCGCGATTTGGGCGACATCGTCAACAG
CCCGATTGTCGCGGTCGGCGGGTATTTGGCAACCGCCGCGAACGACGGGATGGTGCATATCTTCAAAAAAAACGGCGGCA
GTGATGAACGCAGCTACAATCTGAAGCTCAGCTACATCCCCGGCACGGTGCCGCGCCAATATTTTGATAACGACACTTTC
GCTCTCAAAGACTCCACCCTCGCCCAAGAGCTGCGCACCTTTGCCGAAAAAGGCTATGTGGGCGACCGCTACGGCGTGGA
CGGCGGCTTTGTCTTGCGTCAAGTTAACTTAAACGGACAAGACCGCGTGTTTATGTTCGGCGCGATGGGTTTGGGCGGCA
GAGGCGCATACGCCTTGGATTTAAGCAAAATCAACGGAAATTATCCGGCCGCCGCTCCCCTGTTTGATGTCAAAAATGGC
GATAAAAACGGCAAAAACGGCAAAAATCGCGTGGAAGTGGAATTAGGCTACACCGTCGGTACGCCGCAAATCGGCAAAAC
CCAAAACGGCAAATACGCCGCCTTCCTCGCCTCCGGTTATGCGGCTAAACAAATTGCCAGCCAAGAAAATAAAACCGCGC
TGTATGTGTATGATTTGGGAAACGGCAGTGGTAGTCTGATTAAAAAAATCGAAGTGCAGGGCGGCAAGGGCGGGCTTTCG
TCCCCCACGCTGGTGGATAAAGATTTGGACGGCATTGTCGATATCGCCTATGCCGGCGACCGGGGCGGCAATATGTACCG
CTTTGATTTGAGCAGCGACAAGCCGTCCGAGTGGACTGTACGCACTATTTTCGAAGGCGGGAAGCCGATTACCTCCGCGC
CCGCCGTTTCCCGACTGGCAGACAAACGCGTCGTCATCTTCGGTACGGGCAGCGATTTGAGTGAAGAGGATGTACTGAAT
ACGGACGAACAATATATTTACGGTATCTTTGACGACGATGAGGGGACGGTTAATGTAAAGGTAACAAACGGCACGGGAGG
CGGGCTGCTCGAGCAAAACCTTACGCAGGAAAATAAAACCTTGTTCCTGACAAATAATAAGGCATCCGGCGGATCGAACG
GCAAAGGGTGGGTAGTGAAATTGAGGCAAGGAGAACGCGTTACCGTCAAACCGACCGTGGTATTGCGTACCGCCTTCGTA
ACCATCCGCAAGTATAAAGACGACGGCTGCGGCGCGGAAACCGCCATTTTGGGCATCAATACCGCTGACGGCGGCGCATT
GACTCCGAGAAGCGCGCGCCCGATTGTGCCGGATAACCAGGTTGCGCAATATTCCGGCCATCAGAAAATGAACGGCAAGT
CCATCCCCATAGGCTGCATGTGGAAAAACGGCAAAACCGTCTGCCCGAACGGATATGTTTACGACAAACCGGTTAATGTG
CGTTACCTGGACGAAAAGAAAACAGACGATTTCCCCGTCACGGCAGACGGTGATGCAGGCGGCAGCGGAACATTCAAAGA
GGGTAAAAAACCCGCCCGCAATAACCGGTGCTTCTCCGGAAAAGGTGTGCGCACCCTGCTGATGAACGATTTGGACAGCT
TGGATATTACCGGCCCGATGTGCGGTATCAAACGCTTAAGCTGGCGCGAAGTCTTCTTCTGA

Domains

Predicted by InterproScan.

Neisseria PilC beta-propeller domain (T4P_PilY1)

(501-847)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Neisseria meningitidis A1493

74.43

100

0.758