Detailed information NTG0739010

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QCG48_RS00095
• Genome accession: NZ_CP122316
• Coordinates: 14647..15639 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081588.1
• Uniprot ID: Q540P0
• Organism: Escherichia coli strain HT-946
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 9647..20639

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QCG48_RS00065 (QCG48_00065)	ispD	9708..10418 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
QCG48_RS00070 (QCG48_00070)	ispF	10418..10897 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QCG48_RS00075 (QCG48_00075)	truD	10894..11943 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
QCG48_RS00080 (QCG48_00080)	surE	11924..12685 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
QCG48_RS00085 (QCG48_00085)	pcm	12679..13305 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
QCG48_RS00090 (QCG48_00090)	nlpD	13490..14584 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
QCG48_RS00095 (QCG48_00095)	rpoS	14647..15639 (+)	993	WP_000081588.1	RNA polymerase sigma factor RpoS	Regulator
QCG48_RS00100 (QCG48_00100)	ygbN	15733..17097 (-)	1365	WP_000104441.1	GntP family transporter	-
QCG48_RS00105 (QCG48_00105)	ygbM	17186..17962 (-)	777	WP_001136934.1	HPr family phosphocarrier protein	-
QCG48_RS00110 (QCG48_00110)	ygbL	17967..18605 (-)	639	WP_001278994.1	aldolase	-
QCG48_RS00115 (QCG48_00115)	otnK	18697..19863 (-)	1167	WP_001393459.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37971.86 Da
• Isoelectric Point: 4.5886

>NTDB_id=739010 QCG48_RS00095 WP_000081588.1 14647..15639(+) (rpoS) [Escherichia coli strain HT-946]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=739010 QCG48_RS00095 WP_000081588.1 14647..15639(+) (rpoS) [Escherichia coli strain HT-946]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAACAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

• Sigma-70 region 3 (Sigma70_r3) (174-248)

3D structure

• AlphaFold DB: Q540P0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715