Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   OHM03_RS00265 Genome accession   NZ_CP107271
Coordinates   51623..54712 (-) Length   1029 a.a.
NCBI ID   WP_263955085.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 1123850     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 46623..59712
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHM03_RS00240 (OHM03_00240) - 47252..47785 (-) 534 WP_003692498.1 hypothetical protein -
  OHM03_RS00245 (OHM03_00245) - 48507..48896 (-) 390 WP_003687278.1 endonuclease domain-containing protein -
  OHM03_RS00255 (OHM03_00255) - 49059..49438 (-) 380 Protein_48 VOC family protein -
  OHM03_RS00260 (OHM03_00260) carA 49492..50625 (-) 1134 WP_003687283.1 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit -
  OHM03_RS00265 (OHM03_00265) pilC 51623..54712 (-) 3090 WP_263955085.1 PilC family type IV pilus tip adhesin Machinery gene
  OHM03_RS00270 (OHM03_00270) apbC 56665..57744 (-) 1080 WP_003687290.1 iron-sulfur cluster carrier protein ApbC -
  OHM03_RS00280 (OHM03_00280) - 58118..58627 (+) 510 WP_003687293.1 protein disulfide oxidoreductase -
  OHM03_RS00285 (OHM03_00285) nadR 58968..59408 (+) 441 WP_003687296.1 MarR family adhesin repressor NadR -

Sequence

Protein


Download         Length: 1029 a.a.        Molecular weight: 113213.27 Da        Isoelectric Point: 9.7594

>NTDB_id=739007 OHM03_RS00265 WP_263955085.1 51623..54712(-) (pilC) [Neisseria gonorrhoeae strain 1123850]
MNKTLKRRVFRHTALYAAILMFSHTGGGGAQAQTREYAIIMNERNQPEVKWEGSYSTLREKDRKREYTHHKYPRGGSSVS
FNNNDELVSQQSGTAVFGTATYLPPYGKVSGFDADALKGRANAVDWIRTTRIALAGYSYAGVVCNSTTGCPKLVYKTRFS
FDNPDLAKTGGRLNRHTEPSRDNSPIYKLKDYPWLGVSFNLGAEGTAKDGKVTNKLVSSFDENNSNQNLVYTTEGHNISL
GNWQRESTAMAYYLNAKLHLLDKKGIKDITSKTVRLGTLRPRVETTGRSWLDFWATWKIEDKGNITVRLGLPEVKAGRCI
NKPNPNPKSALSPALTAPALWFGPVQNGKVQMYSASVSTYPDSSSSRIFLQELKTQTDPARPGRHSLAALDTQNIKSREP
NFNSRQTVIRLPGGVYKINPVKNGGRVAGFNGNDGKNDTFGIYKDRLVTPEADEWSEVLLPWTARYYGNDDIFKTFNQPN
NKKQSDKKQYSQKYRIRTKEDDNDKPRDLGDIVNSPITAVGGYLATSANDGMVHIFKKTGTDQRGYELKLSYIPGTMERK
DIENQDSTLAKELRTFAEKGYVGDRYGVDGGFVLRSITDDQDRQKHFFMFGAMGLGGRGAYALDLSKIDSNPVGVSMFDV
QNESKNNGVKLGYTVGTPQIGKTQNGKYAAFLASGYAAKQIASQENKTALYVYDLGNGSGSLIKKIEVQGGKGGLSSPTL
VDKDLDGIVDIAYAGDRGGNMYRFDLSSDKPSEWTVRTIFEGGKPITSAPAVSRLADKRVVIFGTGSDLSEEDVLNTDEQ
YIYGIFDDDEGTVNVKVTNGTGGGLLEQNLTQENKTLFLTNNKASGGSNGKGWVVKLRQGERVTVKPTVVLRTAFVTIRK
YKDDGCGAETAILGINTADGGALTPRSARPIVPDNQVAQYSGHQKMNGKSIPIGCMWKNGKTVCPNGYVYDKPVNVRYLD
EKKTDDFPVTADGDAGGSGTFKEGKKPARNNRCFSGKGVRTLLMNDLDSLDITGPMCGIKRLSWREVFF

Nucleotide


Download         Length: 3090 bp        

>NTDB_id=739007 OHM03_RS00265 WP_263955085.1 51623..54712(-) (pilC) [Neisseria gonorrhoeae strain 1123850]
ATGAATAAAACTTTAAAAAGGCGGGTTTTCCGCCATACCGCGCTTTATGCCGCCATCTTGATGTTTTCCCATACCGGCGG
GGGGGGGGCGCAGGCGCAAACCCGTGAATACGCTATTATCATGAACGAACGAAATCAGCCGGAGGTAAAGTGGGAGGGTT
CATATTCAACCTTAAGGGAAAAAGACAGGAAGCGCGAATATACTCATCATAAGTACCCACGAGGAGGAAGCTCTGTCTCA
TTCAACAATAACGATGAGCTTGTTTCTCAACAAAGCGGTACTGCCGTTTTTGGCACAGCCACCTACCTGCCGCCCTACGG
CAAGGTTTCCGGTTTTGATGCCGACGCTCTGAAAGGGCGCGCCAATGCCGTCGATTGGATTCGTACCACCCGCATCGCGC
TGGCAGGCTACAGCTACGCCGGTGTCGTATGCAACAGCACCACAGGCTGTCCCAAACTTGTCTATAAAACCCGATTTTCC
TTCGATAATCCCGACTTGGCAAAAACAGGAGGCAGGCTGAATAGGCACACAGAGCCAAGCCGCGACAATTCGCCCATTTA
CAAATTGAAGGATTATCCATGGTTGGGCGTGTCTTTCAATTTGGGCGCCGAGGGTACCGCCAAAGATGGTAAGGTAACCA
ACAAATTGGTATCTTCTTTTGATGAAAACAATAGTAATCAAAACCTCGTCTATACCACGGAAGGCCACAATATTTCCTTG
GGCAACTGGCAGCGCGAAAGTACCGCCATGGCCTATTATCTGAACGCCAAACTGCACCTGCTGGACAAAAAAGGGATTAA
AGATATCACCAGCAAAACAGTGCGGTTGGGCACCTTGAGACCGCGCGTCGAGACGACAGGACGAAGCTGGCTAGATTTTT
GGGCTACGTGGAAGATTGAAGATAAAGGGAACATTACAGTCCGCCTCGGCCTGCCGGAAGTCAAAGCAGGCCGCTGCATC
AACAAACCGAACCCCAATCCCAAATCAGCCCTTTCGCCGGCACTGACCGCCCCCGCGCTGTGGTTCGGTCCTGTGCAAAA
TGGCAAGGTGCAGATGTATTCCGCTTCGGTTTCCACCTACCCCGACAGTTCGAGCAGCCGCATCTTCCTCCAAGAGCTGA
AAACTCAAACCGACCCCGCCCGGCCCGGCCGGCATTCCCTCGCCGCTTTGGATACGCAGAACATCAAAAGCCGCGAGCCG
AATTTCAACTCAAGGCAGACCGTGATCCGATTGCCGGGCGGCGTGTACAAGATCAACCCGGTCAAGAACGGCGGCCGGGT
CGCGGGTTTTAATGGCAATGACGGCAAAAACGACACTTTCGGCATCTACAAGGACAGGCTCGTCACACCTGAGGCCGACG
AGTGGAGCGAAGTGCTGCTGCCTTGGACGGCTCGGTATTACGGTAATGACGATATATTTAAAACATTCAACCAACCAAAC
AACAAAAAACAAAGCGACAAAAAACAATACAGCCAAAAATACCGCATCCGCACAAAAGAAGATGACAATGACAAACCCCG
CGATTTGGGCGACATCGTCAACAGCCCGATAACGGCGGTCGGCGGGTATCTGGCAACTTCTGCCAACGACGGGATGGTGC
ATATCTTCAAAAAAACCGGCACAGACCAACGAGGCTACGAACTGAAGCTCAGCTACATCCCCGGTACGATGGAGCGTAAG
GATATTGAAAACCAAGACTCCACCCTCGCCAAAGAGCTGCGCACCTTTGCCGAAAAAGGCTATGTGGGCGACCGCTACGG
CGTGGACGGCGGCTTTGTCTTGCGCAGCATTACAGATGACCAAGACAGGCAAAAACATTTCTTTATGTTCGGCGCAATGG
GCCTTGGCGGCAGAGGCGCATACGCCTTGGATTTAAGCAAAATCGACAGCAACCCGGTCGGCGTTTCCATGTTTGATGTC
CAAAACGAGAGTAAAAATAATGGCGTGAAATTAGGCTACACCGTCGGTACGCCGCAAATCGGCAAAACCCAAAACGGCAA
ATACGCCGCCTTCCTCGCCTCCGGTTATGCGGCTAAACAAATTGCCAGCCAAGAAAATAAAACCGCGCTGTATGTGTATG
ATTTGGGAAACGGCAGTGGTAGTCTGATTAAAAAAATCGAAGTGCAGGGCGGCAAGGGCGGGCTTTCGTCCCCCACGCTG
GTGGATAAAGATTTGGACGGCATTGTCGATATCGCCTATGCCGGCGACCGGGGCGGCAATATGTACCGCTTTGATTTGAG
CAGCGACAAGCCGTCCGAGTGGACTGTACGCACTATTTTCGAAGGCGGGAAGCCGATTACCTCCGCGCCCGCCGTTTCCC
GACTGGCAGACAAACGCGTCGTCATCTTCGGTACGGGCAGCGATTTGAGTGAAGAGGATGTACTGAATACGGACGAACAA
TATATTTACGGTATCTTTGACGACGATGAGGGGACGGTTAATGTAAAGGTAACAAACGGCACGGGAGGCGGGCTGCTCGA
GCAAAACCTTACGCAGGAAAATAAAACCTTGTTCCTGACAAATAATAAGGCATCCGGCGGATCGAACGGCAAAGGGTGGG
TAGTGAAATTGAGGCAAGGAGAACGCGTTACCGTCAAACCGACCGTGGTATTGCGTACCGCCTTCGTAACCATCCGCAAG
TATAAAGACGACGGCTGCGGCGCGGAAACCGCCATTTTGGGCATCAATACCGCTGACGGCGGCGCATTGACTCCGAGAAG
CGCGCGCCCGATTGTGCCGGATAACCAGGTTGCGCAATATTCCGGCCATCAGAAAATGAACGGCAAGTCCATCCCCATAG
GCTGCATGTGGAAAAACGGCAAAACCGTCTGCCCGAACGGATATGTTTACGACAAACCGGTTAATGTGCGTTACCTGGAC
GAAAAGAAAACAGACGATTTCCCCGTCACGGCAGACGGTGATGCAGGCGGCAGCGGAACATTCAAAGAGGGTAAAAAACC
CGCCCGCAATAACCGGTGCTTCTCCGGAAAAGGTGTGCGCACCCTGCTGATGAACGATTTGGACAGCTTGGATATTACCG
GCCCGATGTGCGGTATCAAACGCTTAAGCTGGCGCGAAGTCTTCTTCTGA

Domains

Predicted by InterproScan.

Neisseria PilC beta-propeller domain (T4P_PilY1)

(509-843)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Neisseria meningitidis A1493

72.222

100

0.733